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      Effect of drought stress on the genetic architecture of photosynthate allocation and remobilization in pods of common bean ( Phaseolus vulgaris L.), a key species for food security

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          Abstract

          Background

          Common bean is the most important staple grain legume for direct human consumption and nutrition. It complements major sources of carbohydrates, including cereals, root crop, or plantain, as a source of dietary proteins. It is also a significant source of vitamins and minerals like iron and zinc. To fully play its nutritional role, however, its robustness against stresses needs to be strengthened. Foremost among these is drought, which commonly affects its productivity and seed quality. Previous studies have shown that photosynthate remobilization and partitioning is one of the main mechanisms of drought tolerance and overall productivity in common bean.

          Results

          In this study, we sought to determine the inheritance of pod harvest index (PHI), a measure of the partitioning of pod biomass to seed biomass, relative to that of grain yield. We evaluated a recombinant inbred population of the cross of ICA Bunsi and SXB405, both from the Mesoamerican gene pool, to determine the effects of intermittent and terminal drought stresses on the genetic architecture of photosynthate allocation and remobilization in pods of common bean. The population was grown for two seasons, under well-watered conditions and terminal and intermittent drought stress in one year, and well-watered conditions and terminal drought stress in the second year. There was a significant effect of the water regime and year on all the traits, at both the phenotypic and QTL levels. We found nine QTLs for pod harvest index, including a major (17% of variation explained), stable QTL on linkage group Pv07. We also found eight QTLs for yield, three of which clustered with PHI QTLs, underscoring the importance of photosynthate remobilization in productivity. We also found evidence for substantial epistasis, explaining a considerable part of the variation for yield and PHI.

          Conclusion

          Our results highlight the genetic relationship between PHI and yield and confirm the role of PHI in selection of both additive and epistatic effects controlling drought tolerance. These results are a key component to strengthen the robustness of common bean against drought stresses.

          Electronic supplementary material

          The online version of this article (10.1186/s12870-019-1774-2) contains supplementary material, which is available to authorized users.

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          Most cited references65

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          R/qtl: QTL mapping in experimental crosses

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            Marker-assisted selection: an approach for precision plant breeding in the twenty-first century.

            DNA markers have enormous potential to improve the efficiency and precision of conventional plant breeding via marker-assisted selection (MAS). The large number of quantitative trait loci (QTLs) mapping studies for diverse crops species have provided an abundance of DNA marker-trait associations. In this review, we present an overview of the advantages of MAS and its most widely used applications in plant breeding, providing examples from cereal crops. We also consider reasons why MAS has had only a small impact on plant breeding so far and suggest ways in which the potential of MAS can be realized. Finally, we discuss reasons why the greater adoption of MAS in the future is inevitable, although the extent of its use will depend on available resources, especially for orphan crops, and may be delayed in less-developed countries. Achieving a substantial impact on crop improvement by MAS represents the great challenge for agricultural scientists in the next few decades.
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              Improving photosynthetic efficiency for greater yield.

              Increasing the yield potential of the major food grain crops has contributed very significantly to a rising food supply over the past 50 years, which has until recently more than kept pace with rising global demand. Whereas improved photosynthetic efficiency has played only a minor role in the remarkable increases in productivity achieved in the last half century, further increases in yield potential will rely in large part on improved photosynthesis. Here we examine inefficiencies in photosynthetic energy transduction in crops from light interception to carbohydrate synthesis, and how classical breeding, systems biology, and synthetic biology are providing new opportunities to develop more productive germplasm. Near-term opportunities include improving the display of leaves in crop canopies to avoid light saturation of individual leaves and further investigation of a photorespiratory bypass that has already improved the productivity of model species. Longer-term opportunities include engineering into plants carboxylases that are better adapted to current and forthcoming CO(2) concentrations, and the use of modeling to guide molecular optimization of resource investment among the components of the photosynthetic apparatus, to maximize carbon gain without increasing crop inputs. Collectively, these changes have the potential to more than double the yield potential of our major crops.
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                Author and article information

                Contributors
                plgepts@ucdavis.edu
                Journal
                BMC Plant Biol
                BMC Plant Biol
                BMC Plant Biology
                BioMed Central (London )
                1471-2229
                30 April 2019
                30 April 2019
                2019
                : 19
                : 171
                Affiliations
                [1 ]ISNI 0000 0004 1936 9684, GRID grid.27860.3b, Department of Plant Sciences, , University of California, ; Davis, CA USA
                [2 ]ISNI 0000 0004 1937 0722, GRID grid.11899.38, Cell and Molecular Biology Laboratory, Centro de Energia Nuclear na Agricultura (CENA), , Universidade de São Paulo, ; Piracicaba, SP Brazil
                [3 ]Present Address: Universidade Federal do Rio Grande do Sul, Campus Litoral Norte, Imbé, RS Brazil
                [4 ]ISNI 0000 0001 0943 556X, GRID grid.418348.2, Centro Internacional de Agricultura Tropical (CIAT), ; Cali, Colombia
                [5 ]ISNI 0000 0004 0404 0958, GRID grid.463419.d, United States Department of Agriculture, , Plant Polymer Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, ; Peoria, Il USA
                Author information
                http://orcid.org/0000-0003-3709-9131
                http://orcid.org/0000-0001-5176-7410
                http://orcid.org/0000-0002-1056-4665
                Article
                1774
                10.1186/s12870-019-1774-2
                6492436
                31039735
                fb4933a9-b8e5-4bf7-824c-0900d45cfab1
                © The Author(s). 2019

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 28 January 2019
                : 11 April 2019
                Funding
                Funded by: USDA NIFA AFRI
                Award ID: 2016-67013-24460
                Award Recipient :
                Categories
                Research Article
                Custom metadata
                © The Author(s) 2019

                Plant science & Botany
                abiotic stress,epistasis,photosynthate remobilization,pod harvest index,quantitative trait loci

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