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      New record of Neoclinus lacunicola (Actinopterygii: Perciformes: Chaenopsidae) from Ulleung Island, Korea revealed by body morphometry and mitochondrial DNA barcoding

      Author(s): , ,
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      Journal: Acta Ichthyologica et Piscatoria
      Publisher: Pensoft Publishers

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          Abstract

          One specimen (38.3 mm SL) of Neoclinus lacunicola Fukao, 1980, belonging to the family Chaenopsidae, was first recorded from Ulleung Island, Korea (East Sea, otherwise known as the Sea of Japan) on 5 January 2021. This species was characterized by paired external pores of incomplete lateral line running from the upper margin of the opercle, seven pairs of supraorbital cirri arranged in two rows, occipital region with a pair of cirri, and 13 rays of pectoral fin. This species is morphologically similar to the Neoclinus toshimaensis Fukao, 1980, but differs in the number of cirri on the supraorbital (6–7 versus 9–11 cirri). This study documents the first report of N. lacunicola in Korean waters and proposes the new Korean name of ‘eol-lug-bi-neul-be-do-la-chi’ for the species. For the confirmation of the identity of the species, a partial gene sequence of the mt COI (570 bp) of N. lacunicola was obtained for the first time.

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          MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

          Koichiro Tamura, Glen Stecher, Daniel Walter Peterson … (2013)
          We announce the release of an advanced version of the Molecular Evolutionary Genetics Analysis (MEGA) software, which currently contains facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis. In version 6.0, MEGA now enables the inference of timetrees, as it implements the RelTime method for estimating divergence times for all branching points in a phylogeny. A new Timetree Wizard in MEGA6 facilitates this timetree inference by providing a graphical user interface (GUI) to specify the phylogeny and calibration constraints step-by-step. This version also contains enhanced algorithms to search for the optimal trees under evolutionary criteria and implements a more advanced memory management that can double the size of sequence data sets to which MEGA can be applied. Both GUI and command-line versions of MEGA6 can be downloaded from www.megasoftware.net free of charge.
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            The neighbor-joining method: a new method for reconstructing phylogenetic trees.

            N Saitou, M Nei (1987)
            A new method called the neighbor-joining method is proposed for reconstructing phylogenetic trees from evolutionary distance data. The principle of this method is to find pairs of operational taxonomic units (OTUs [= neighbors]) that minimize the total branch length at each stage of clustering of OTUs starting with a starlike tree. The branch lengths as well as the topology of a parsimonious tree can quickly be obtained by using this method. Using computer simulation, we studied the efficiency of this method in obtaining the correct unrooted tree in comparison with that of five other tree-making methods: the unweighted pair group method of analysis, Farris's method, Sattath and Tversky's method, Li's method, and Tateno et al.'s modified Farris method. The new, neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods.
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              A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

              Motoo Kimura (1980)
              Some simple formulae were obtained which enable us to estimate evolutionary distances in terms of the number of nucleotide substitutions (and, also, the evolutionary rates when the divergence times are known). In comparing a pair of nucleotide sequences, we distinguish two types of differences; if homologous sites are occupied by different nucleotide bases but both are purines or both pyrimidines, the difference is called type I (or "transition" type), while, if one of the two is a purine and the other is a pyrimidine, the difference is called type II (or "transversion" type). Letting P and Q be respectively the fractions of nucleotide sites showing type I and type II differences between two sequences compared, then the evolutionary distance per site is K = -(1/2) ln [(1-2P-Q) square root of 1-2Q]. The evolutionary rate per year is then given by k = K/(2T), where T is the time since the divergence of the two sequences. If only the third codon positions are compared, the synonymous component of the evolutionary base substitutions per site is estimated by K'S = -(1/2) ln (1-2P-Q). Also, formulae for standard errors were obtained. Some examples were worked out using reported globin sequences to show that synonymous substitutions occur at much higher rates than amino acid-altering substitutions in evolution.
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                Author and article information

                Contributors
                Journal
                Title: Acta Ichthyologica et Piscatoria
                Abbreviated Title: AIeP
                Publisher: Pensoft Publishers
                ISSN (Electronic): 1734-1515
                ISSN (Print): 0137-1592
                Publication date Created: October 01 2021
                Publication date (Electronic): October 01 2021
                Volume: 51
                Issue: 4
                Pages: 339-344
                Article
                DOI: 10.3897/aiep.51.67056
                SO-VID: fbffdeb8-b021-46ee-a6c1-73f52fcede5d
                Copyright © © 2021
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                http://creativecommons.org/licenses/by/4.0/

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