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      Is Open Access

      Expression levels of circulating miRNAs as biomarkers during multimodal treatment of rectal cancer - TiMiSNAR-mirna: a substudy of the TiMiSNAR Trial (NCT03962088)

      research-article
      1 , , 2 , 3 , 3 , 3 , 4 , 4 , 4 , 5 , 6 , 6 , 6 , 6 , 7 , 8 , 8 , 9 , 10 , 9 , 11 , 11 , 11 , 12 , 12 , 12 , 13 , 13 , 13 , 14 , 14 , 15 , 16
      Trials
      BioMed Central
      Colorectal cancer, miRNA, Neoadjuvant treatment, Biomarkers, Translational research

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          Abstract

          Background

          Neoadjuvant chemoradiotherapy followed by surgery is the mainstay treatment for locally advanced rectal cancer, leading to significant decrease in tumor size (downsizing) and a shift towards earlier disease stage (downstaging). Extensive histopathological work-up of the tumor specimen after surgery including tumor regression grading and lymph node status helped to visualize individual tumor sensitivity to chemoradiotherapy, retrospectively. As the response to neoadjuvant chemoradiotherapy is heterogeneous, however, valid biomarkers are needed to monitor tumor response. A relevant number of studies aimed to identify molecular markers retrieved from tumor tissue while the relevance of blood-based biomarkers is less stringent assessed. MicroRNAs are currently under investigation to serve as blood-based biomarkers. To date, no screening approach to identify relevant miRNAs as biomarkers in blood of patients with rectal cancer was undertaken. The aim of the study is to investigate the role of circulating miRNAs as biomarkers in those patients included in the TiMiSNAR Trial (NCT 03465982). This is a biomolecular substudy of TiMiSNAR Trial (NCT03962088).

          Methods

          All included patients in the TiMiSNAR Trial are supposed to undergo blood collection at the time of diagnosis, after neoadjuvant treatment, after 1 month from surgery, and after adjuvant chemotherapy whenever indicated.

          Discussion

          TiMiSNAR-MIRNA will evaluate the association of variation between preneoadjuvant and postneoadjuvant expression levels of miRNA with pathological complete response. Moreover, the study will evaluate the role of liquid biopsies in the monitoring of treatment, correlate changes in expression levels of miRNA following complete surgical resection with disease-free survival, and evaluate the relation between changes in miRNA during surveillance and tumor relapse.

          Trial registration

          Clinicaltrials.gov NCT03962088. Registered on 23 May 2019.

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          Most cited references33

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          • Abstract: found
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          Small silencing RNAs: an expanding universe.

          Since the discovery in 1993 of the first small silencing RNA, a dizzying number of small RNA classes have been identified, including microRNAs (miRNAs), small interfering RNAs (siRNAs) and Piwi-interacting RNAs (piRNAs). These classes differ in their biogenesis, their modes of target regulation and in the biological pathways they regulate. There is a growing realization that, despite their differences, these distinct small RNA pathways are interconnected, and that small RNA pathways compete and collaborate as they regulate genes and protect the genome from external and internal threats.
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            Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs.

            The factors regulating the expression of microRNAs (miRNAs), a ubiquitous family of approximately 22-nt noncoding regulatory RNAs, remain undefined. However, it is known that miRNAs are first transcribed as a largely unstructured precursor, termed a primary miRNA (pri-miRNA), which is sequentially processed in the nucleus, to give the approximately 65-nt pre-miRNA hairpin intermediate, and then in the cytoplasm, to give the mature miRNA. Here we have sought to identify the RNA polymerase responsible for miRNA transcription and to define the structure of a full-length human miRNA. We show that the pri-miRNA precursors for nine human miRNAs are both capped and polyadenylated and report the sequence of the full-length, approximately 3433-nt pri-miR-21 RNA. This pri-miR-21 gene sequence is flanked 5' by a promoter element able to transcribe heterologous mRNAs and 3' by a consensus polyadenylation sequence. Nuclear processing of pri-miRNAs was found to be efficient, thus largely preventing the nuclear export of full-length pri-miRNAs. Nevertheless, an intact miRNA stem-loop precursor located in the 3' UTR of a protein coding gene only moderately inhibited expression of the linked open reading frame, probably because the 3' truncated mRNA could still be exported and expressed. Together, these data show that human pri-miRNAs are not only structurally similar to mRNAs but can, in fact, function both as pri-miRNAs and mRNAs.
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              Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans.

              Double-stranded RNAs can suppress expression of homologous genes through an evolutionarily conserved process named RNA interference (RNAi) or post-transcriptional gene silencing (PTGS). One mechanism underlying silencing is degradation of target mRNAs by an RNP complex, which contains approximately 22 nt of siRNAs as guides to substrate selection. A bidentate nuclease called Dicer has been implicated as the protein responsible for siRNA production. Here we characterize the Caenorhabditis elegans ortholog of Dicer (K12H4.8; dcr-1) in vivo and in vitro. dcr-1 mutants show a defect in RNAi. Furthermore, a combination of phenotypic abnormalities and RNA analysis suggests a role for dcr-1 in a regulatory pathway comprised of small temporal RNA (let-7) and its target (e.g., lin-41).
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                Author and article information

                Contributors
                igor.monsellato@ospedale.al.it
                elisabetta.garibaldi@ospedale.al.it
                cassinotti.elisa@gmail.com
                ludovica.baldari@gmail.com
                luigi.boni@policlinico.mi.it
                elmore.ugo@hsr.it
                delpini.roberto@hsr.it
                rosati.riccardo@unisr.it
                roberto.perinotti@aslbi.piemonte.it
                filippo.alongi@sacrocuore.it
                elisa.bertocchi@sacrocuore.it
                stefania.gori@sacrocuore.it
                giacomo.ruffo@sacrocuore.it
                gpernazza@hsangiovanni.roma.it
                fabiopulighe@gmail.com
                carlodenisco@gmail.com
                emilio.morpurgo@aulss6.veneto.it
                tania.contardo@aulss6.veneto.it
                enzo.mammano@aulss6.veneto.it
                fedefez@hotmail.com
                menegatti.b@virgilio.it
                corattian@gmail.com
                p.buccianti@ao-pisa.toscana.it
                r.balestri@ao-pisa.toscana.it
                c.ceccarelli19@gmail.com
                cavalied@gmail.com
                leonardo.solaini@auslromagna.it
                giorgio.ercolani2@unibo.it
                elena.traverso@ospedale.al.it
                vfusco@ospedale.al.it
                valter.torri@marionegri.it
                sorecchia@ospedale.al.it
                Journal
                Trials
                Trials
                Trials
                BioMed Central (London )
                1745-6215
                25 July 2020
                25 July 2020
                2020
                : 21
                : 678
                Affiliations
                [1 ]Department of Surgery, Azienda Ospedaliera SS. Antonio e Biagio e Cesare Arrigo, Via Venezia 16, 15121 Alessandria, Italy
                [2 ]Department of Radiation Oncology, Azienda Ospedaliera SS. Antonio e Biagio e Cesare Arrigo, Alessandria, Italy
                [3 ]Department of Surgery, Fondazione IRCCS Ca’ Granda, Ospedale Maggiore Policlinico, University of Milan, Milan, Italy
                [4 ]GRID grid.18887.3e, ISNI 0000000417581884, Ospedale San raffaele IRCCS, ; Milan, Italy
                [5 ]GRID grid.417165.0, ISNI 0000 0004 1759 6939, Ospedale degli Infermi, ; Biella, Italy
                [6 ]GRID grid.416422.7, ISNI 0000 0004 1760 2489, Ospedale Sacro Cuore Don Calabria, ; Negrar, Italy
                [7 ]GRID grid.415032.1, ISNI 0000 0004 1756 8479, Azienda Ospedaliera San Giovanni Addolorata, ; Rome, Italy
                [8 ]Ospedale San Francesco, Nuoro, Italy
                [9 ]GRID grid.411474.3, ISNI 0000 0004 1760 2630, Ospedale Civile Pietro Cosma, Camposampiero/Ospedale Sant’Antonio, ; Padova, Italy
                [10 ]GRID grid.411474.3, ISNI 0000 0004 1760 2630, Ospedale Civile Pietro Cosma, Camposampiero, ; Padova, Italy
                [11 ]GRID grid.24704.35, ISNI 0000 0004 1759 9494, Azienda Ospedaliero Universitaria Careggi, ; Florence, Italy
                [12 ]GRID grid.144189.1, ISNI 0000 0004 1756 8209, Azienda Ospedaliero Universitaria Pisana, ; Pisa, Italy
                [13 ]GRID grid.415079.e, ISNI 0000 0004 1759 989X, Ospedale “G.B. Morgagni L. Pierantoni”, ; Forlì, Italy
                [14 ]Department of Oncology, Azienda Ospedaliera SS. Antonio e Biagio e Cesare Arrigo, Alessandria, Italy
                [15 ]GRID grid.4527.4, ISNI 0000000106678902, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, ; Milan, Italy
                [16 ]Department of Pathology, Azienda Ospedaliera SS. Antonio e Biagio e Cesare Arrigo, Alessandria, Italy
                Author information
                http://orcid.org/0000-0003-3096-7901
                Article
                4568
                10.1186/s13063-020-04568-9
                7382047
                fd259268-5564-43b6-bf6b-35d791aabaa1
                © The Author(s) 2020

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 23 November 2019
                : 2 July 2020
                Categories
                Study Protocol
                Custom metadata
                © The Author(s) 2020

                Medicine
                colorectal cancer,mirna,neoadjuvant treatment,biomarkers,translational research
                Medicine
                colorectal cancer, mirna, neoadjuvant treatment, biomarkers, translational research

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