10
views
0
recommends
+1 Recommend
0 collections
    2
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      High-Resolution Structure and Intermolecular Interactions between L-type Straight Flagellar Filaments

      Preprint

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Bacterial mobility is powered by rotation of helical flagellar filaments driven by rotary motors. Flagellin isolated from {\it Salmonella Typhimurium} SJW1660 strain, which differs by a point mutation from the wild-type strain, assembles into straight filaments in which flagellin monomers are arranged into left-handed helix. Using small-angle X-ray scattering (SAXS) and osmotic stress methods, we investigated the high-resolution structure of SJW1660 flagellar filaments as well as intermolecular forces that govern their assembly into dense hexagonal bundle. The scattering data were fitted to high-resolution models, which took into account the atomic structure of the flagellin subunits. The analysis revealed the exact helical arrangement and the super-helical twist of the flagellin subunits within the filaments. Under osmotic stress the filaments formed \(2D\) hexagonal bundles. Monte-Carlo simulations and continuum theories were used to analyze the scattering data from hexagonal arrays, revealing how bulk modulus, as well as how the deflection length depends on the applied osmotic stress. Scattering data from aligned flagellar bundles confirmed the predicated structure-factor scattering peak line-shape. Quantitative analysis of the measured equation of state of the bundles revealed the contributions of the electrostatic, hydration, and elastic interactions to the intermolecular interactions associated with bundling of straight semi-flexible flagellar filaments.}%1 {Insert Received for publication Date and in final form Date.

          Related collections

          Most cited references42

          • Record: found
          • Abstract: not found
          • Article: not found

          Atomic Radii in Crystals

            Bookmark
            • Record: found
            • Abstract: not found
            • Article: not found

            X-Ray Diffraction in Random Layer Lattices

            B. Warren (1941)
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Accurate SAXS profile computation and its assessment by contrast variation experiments.

              A major challenge in structural biology is to characterize structures of proteins and their assemblies in solution. At low resolution, such a characterization may be achieved by small angle x-ray scattering (SAXS). Because SAXS analyses often require comparing profiles calculated from many atomic models against those determined by experiment, rapid and accurate profile computation from molecular structures is needed. We developed fast open-source x-ray scattering (FoXS) for profile computation. To match the experimental profile within the experimental noise, FoXS explicitly computes all interatomic distances and implicitly models the first hydration layer of the molecule. For assessing the accuracy of the modeled hydration layer, we performed contrast variation experiments for glucose isomerase and lysozyme, and found that FoXS can accurately represent density changes of this layer. The hydration layer model was also compared with a SAXS profile calculated for the explicit water molecules in the high-resolution structures of glucose isomerase and lysozyme. We tested FoXS on eleven protein, one DNA, and two RNA structures, revealing superior accuracy and speed versus CRYSOL, AquaSAXS, the Zernike polynomials-based method, and Fast-SAXS-pro. In addition, we demonstrated a significant correlation of the SAXS score with the accuracy of a structural model. Moreover, FoXS utility for analyzing heterogeneous samples was demonstrated for intrinsically flexible XLF-XRCC4 filaments and Ligase III-DNA complex. FoXS is extensively used as a standalone web server as a component of integrative structure determination by programs IMP, Chimera, and BILBOMD, as well as in other applications that require rapidly and accurately calculated SAXS profiles. Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.
                Bookmark

                Author and article information

                Journal
                2016-11-12
                Article
                1611.04004
                fd28f30f-f45e-4533-a790-fb8d6dc11f20

                http://arxiv.org/licenses/nonexclusive-distrib/1.0/

                History
                Custom metadata
                q-bio.BM

                Molecular biology
                Molecular biology

                Comments

                Comment on this article