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      jSquid: a Java applet for graphical on-line network exploration.

      Bioinformatics

      User-Computer Interface, Software, physiology, Signal Transduction, Programming Languages, Models, Biological, methods, Information Storage and Retrieval, Computer Simulation, Computer Graphics, Algorithms

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          Abstract

          jSquid is a graph visualization tool for exploring graphs from protein-protein interaction or functional coupling networks. The tool was designed for the FunCoup web site, but can be used for any similar network exploring purpose. The program offers various visualization and graph manipulation techniques to increase the utility for the user. jSquid is available for direct usage and download at http://jSquid.sbc.su.se including source code under the GPLv3 license, and input examples. It requires Java version 5 or higher to run properly. erik.sonnhammer@sbc.su.se Supplementary data are available at Bioinformatics online.

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          Author and article information

          Journal
          10.1093/bioinformatics/btn213
          18445606

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