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      Challenges in measuring individual differences in functional connectivity using fMRI: The case of healthy aging

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          Abstract

          Many studies report individual differences in functional connectivity, such as those related to age. However, estimates of connectivity from fMRI are confounded by other factors, such as vascular health, head motion and changes in the location of functional regions. Here, we investigate the impact of these confounds, and pre‐processing strategies that can mitigate them, using data from the Cambridge Centre for Ageing & Neuroscience ( www.cam-can.com). This dataset contained two sessions of resting‐state fMRI from 214 adults aged 18–88. Functional connectivity between all regions was strongly related to vascular health, most likely reflecting respiratory and cardiac signals. These variations in mean connectivity limit the validity of between‐participant comparisons of connectivity estimates, and were best mitigated by regression of mean connectivity over participants. We also showed that high‐pass filtering, instead of band‐pass filtering, produced stronger and more reliable age‐effects. Head motion was correlated with gray‐matter volume in selected brain regions, and with various cognitive measures, suggesting that it has a biological (trait) component, and warning against regressing out motion over participants. Finally, we showed that the location of functional regions was more variable in older adults, which was alleviated by smoothing the data, or using a multivariate measure of connectivity. These results demonstrate that analysis choices have a dramatic impact on connectivity differences between individuals, ultimately affecting the associations found between connectivity and cognition. It is important that fMRI connectivity studies address these issues, and we suggest a number of ways to optimize analysis choices. Hum Brain Mapp 38:4125–4156, 2017. © 2017 Wiley Periodicals, Inc.

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          Most cited references48

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          An improved framework for confound regression and filtering for control of motion artifact in the preprocessing of resting-state functional connectivity data.

          Several recent reports in large, independent samples have demonstrated the influence of motion artifact on resting-state functional connectivity MRI (rsfc-MRI). Standard rsfc-MRI preprocessing typically includes regression of confounding signals and band-pass filtering. However, substantial heterogeneity exists in how these techniques are implemented across studies, and no prior study has examined the effect of differing approaches for the control of motion-induced artifacts. To better understand how in-scanner head motion affects rsfc-MRI data, we describe the spatial, temporal, and spectral characteristics of motion artifacts in a sample of 348 adolescents. Analyses utilize a novel approach for describing head motion on a voxelwise basis. Next, we systematically evaluate the efficacy of a range of confound regression and filtering techniques for the control of motion-induced artifacts. Results reveal that the effectiveness of preprocessing procedures on the control of motion is heterogeneous, and that improved preprocessing provides a substantial benefit beyond typical procedures. These results demonstrate that the effect of motion on rsfc-MRI can be substantially attenuated through improved preprocessing procedures, but not completely removed. Copyright © 2012 Elsevier Inc. All rights reserved.
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            A whole brain fMRI atlas generated via spatially constrained spectral clustering.

            Connectivity analyses and computational modeling of human brain function from fMRI data frequently require the specification of regions of interests (ROIs). Several analyses have relied on atlases derived from anatomical or cyto-architectonic boundaries to specify these ROIs, yet the suitability of atlases for resting state functional connectivity (FC) studies has yet to be established. This article introduces a data-driven method for generating an ROI atlas by parcellating whole brain resting-state fMRI data into spatially coherent regions of homogeneous FC. Several clustering statistics are used to compare methodological trade-offs as well as determine an adequate number of clusters. Additionally, we evaluate the suitability of the parcellation atlas against four ROI atlases (Talairach and Tournoux, Harvard-Oxford, Eickoff-Zilles, and Automatic Anatomical Labeling) and a random parcellation approach. The evaluated anatomical atlases exhibit poor ROI homogeneity and do not accurately reproduce FC patterns present at the voxel scale. In general, the proposed functional and random parcellations perform equivalently for most of the metrics evaluated. ROI size and hence the number of ROIs in a parcellation had the greatest impact on their suitability for FC analysis. With 200 or fewer ROIs, the resulting parcellations consist of ROIs with anatomic homology, and thus offer increased interpretability. Parcellation results containing higher numbers of ROIs (600 or 1,000) most accurately represent FC patterns present at the voxel scale and are preferable when interpretability can be sacrificed for accuracy. The resulting atlases and clustering software have been made publicly available at: http://www.nitrc.org/projects/cluster_roi/. Copyright © 2011 Wiley Periodicals, Inc.
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              Decreased segregation of brain systems across the healthy adult lifespan.

              Healthy aging has been associated with decreased specialization in brain function. This characterization has focused largely on describing age-accompanied differences in specialization at the level of neurons and brain areas. We expand this work to describe systems-level differences in specialization in a healthy adult lifespan sample (n = 210; 20-89 y). A graph-theoretic framework is used to guide analysis of functional MRI resting-state data and describe systems-level differences in connectivity of individual brain networks. Young adults' brain systems exhibit a balance of within- and between-system correlations that is characteristic of segregated and specialized organization. Increasing age is accompanied by decreasing segregation of brain systems. Compared with systems involved in the processing of sensory input and motor output, systems mediating "associative" operations exhibit a distinct pattern of reductions in segregation across the adult lifespan. Of particular importance, the magnitude of association system segregation is predictive of long-term memory function, independent of an individual's age.
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                Author and article information

                Contributors
                lindageerligs@gmail.com
                Journal
                Hum Brain Mapp
                Hum Brain Mapp
                10.1002/(ISSN)1097-0193
                HBM
                Human Brain Mapping
                John Wiley and Sons Inc. (Hoboken )
                1065-9471
                1097-0193
                23 May 2017
                August 2017
                : 38
                : 8 ( doiID: 10.1002/hbm.v38.8 )
                : 4125-4156
                Affiliations
                [ 1 ] MRC Cognition and Brain Sciences Unit Cambridge United Kingdom
                [ 2 ] Cambridge Centre for Ageing and Neuroscience (Cam‐CAN) University of Cambridge and MRC Cognition and Brain Sciences Unit Cambridge United Kingdom
                [ 3 ] Donders Institute for Brain, Cognition and Behaviour, Radboud University the Netherlands
                [ 4 ] Centre for Speech, Language and the Brain, Department of Psychology University of Cambridge Cambridge United Kingdom
                [ 5 ] Department of Clinical Neurosciences University of Cambridge Cambridge United Kingdom
                Author notes
                [*] [* ]Correspondence to: Linda Geerligs, Donders Institute for Brain, Cognition and Behaviour, Montessorilaan 3 6525 HR Nijmegen, The Netherlands. E‐mail: lindageerligs@ 123456gmail.com
                Author information
                http://orcid.org/0000-0002-1624-8380
                Article
                HBM23653
                10.1002/hbm.23653
                5518296
                28544076
                fff0f46f-c3ee-4f74-ab25-f39f66057baa
                © 2017 The Authors Human Brain Mapping Published by Wiley Periodicals, Inc.

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 05 October 2016
                : 08 May 2017
                : 08 May 2017
                Page count
                Figures: 12, Tables: 7, Pages: 32, Words: 21588
                Funding
                Funded by: Biotechnology and Biological Sciences Research Council
                Award ID: BB/H008217/1 and by the Medical Research Council
                Award ID: MC‐A060‐5PR13
                Funded by: Netherlands Organization for Scientific Research (NWO)
                Award ID: 451‐16‐013
                Award ID: 446‐13‐013
                Funded by: Medical Research Council
                Award ID: MC‐A060‐5PR10
                Award ID: MC‐A060‐5PR13
                Funded by: Wellcome Trust
                Award ID: RG73750‐RRZA/040
                Funded by: British Academy
                Award ID: PF160048
                Categories
                Research Article
                Research Articles
                Custom metadata
                2.0
                hbm23653
                August 2017
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.1.4 mode:remove_FC converted:20.07.2017

                Neurology
                functional connectivity,aging,resting state,pre‐processing,functional magnetic resonance imaging,smoothing,filtering,nuisance regression,vascular health,head motion

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