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      UCSF ChimeraX: Meeting modern challenges in visualization and analysis

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          Abstract

          UCSF ChimeraX is next‐generation software for the visualization and analysis of molecular structures, density maps, 3D microscopy, and associated data. It addresses challenges in the size, scope, and disparate types of data attendant with cutting‐edge experimental methods, while providing advanced options for high‐quality rendering (interactive ambient occlusion, reliable molecular surface calculations, etc.) and professional approaches to software design and distribution. This article highlights some specific advances in the areas of visualization and usability, performance, and extensibility. ChimeraX is free for noncommercial use and is available from http://www.rbvi.ucsf.edu/chimerax/ for Windows, Mac, and Linux.

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          Author and article information

          Contributors
          tef@cgl.ucsf.edu
          Journal
          Protein Sci
          Protein Sci
          10.1002/(ISSN)1469-896X
          PRO
          Protein Science : A Publication of the Protein Society
          John Wiley and Sons Inc. (Hoboken )
          0961-8368
          1469-896X
          06 September 2017
          January 2018
          : 27
          : 1 , Special Issue on Tools for Protein Science ( doiID: 10.1002/pro.v27.1 )
          : 14-25
          Affiliations
          [ 1 ] Department of Pharmaceutical Chemistry University of California San Francisco San Francisco California 94143
          Author notes
          [*] [* ] Correspondence to: Thomas E. Ferrin, Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California 94143. E‐mail: tef@ 123456cgl.ucsf.edu
          Author information
          http://orcid.org/0000-0001-6227-0637
          Article
          PMC5734306 PMC5734306 5734306 PRO3235
          10.1002/pro.3235
          5734306
          28710774
          a0c58070-c2ad-4f77-b2b8-e1841e6f0021
          © 2017 The Protein Society
          History
          : 12 June 2017
          : 07 July 2017
          : 10 July 2017
          Page count
          Figures: 10, Tables: 0, Pages: 12, Words: 7196
          Funding
          Funded by: NIH
          Funded by: NIH National Institute of General Medical Sciences
          Award ID: P41‐GM103311
          Categories
          Tools for Protein Science
          Tools for Protein Science
          Custom metadata
          2.0
          pro3235
          January 2018
          Converter:WILEY_ML3GV2_TO_NLMPMC version:5.2.8 mode:remove_FC converted:18.12.2017

          virtual reality,large‐scale data,integrative hybrid modeling,light‐sheet microscopy,structural biology,density maps,biomolecular visualization and analysis,interactive molecular graphics

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