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      Tools for comparative protein structure modeling and analysis.

      Nucleic Acids Research

      Internet, Models, Molecular, Protein Folding, Proteins, chemistry, Reproducibility of Results, Sequence Alignment, Sequence Homology, Amino Acid, Software, Structural Homology, Protein, Systems Integration

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          Abstract

          The following resources for comparative protein structure modeling and analysis are described (http://salilab.org): MODELLER, a program for comparative modeling by satisfaction of spatial restraints; MODWEB, a web server for automated comparative modeling that relies on PSI-BLAST, IMPALA and MODELLER; MODLOOP, a web server for automated loop modeling that relies on MODELLER; MOULDER, a CPU intensive protocol of MODWEB for building comparative models based on distant known structures; MODBASE, a comprehensive database of annotated comparative models for all sequences detectably related to a known structure; MODVIEW, a Netscape plugin for Linux that integrates viewing of multiple sequences and structures; and SNPWEB, a web server for structure-based prediction of the functional impact of a single amino acid substitution.

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          Journal
          12824331
          168950

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