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      Advancing RAS/RASopathy therapies: An NCI‐sponsored intramural and extramural collaboration for the study of RASopathies

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          Abstract

          RASopathies caused by germline pathogenic variants in genes that encode RAS pathway proteins. These disorders include neurofibromatosis type 1 (NF1), Noonan syndrome (NS), cardiofaciocutaneous syndrome (CFC), and Costello syndrome (CS), and others. RASopathies are characterized by heterogenous manifestations, including congenital heart disease, failure to thrive, and increased risk of cancers. Previous work led by the NCI Pediatric Oncology Branch has altered the natural course of one of the key manifestations of the RASopathy NF1. Through the conduct of a longitudinal cohort study and early phase clinical trials, the MEK inhibitor selumetinib was identified as the first active therapy for the NF1-related peripheral nerve sheath tumors called plexiform neurofibromas (PN). As a result, selumetinib was granted breakthrough therapy designation by the FDA for the treatment of PN. Other RASopathy manifestations may also benefit from RAS targeted therapies. The overall goal of Advancing RAS/RASopathy Therapies (ART), a new NCI initiative, is to develop effective therapies and prevention strategies for the clinical manifestations of the non-NF1 RASopathies and for tumors characterized by somatic RAS mutations. This report reflects discussions from a February 2019 initiation meeting for this project, which had broad international collaboration from basic and clinical researchers and patient advocates.

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          Most cited references62

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          Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.

          The cBioPortal for Cancer Genomics (http://cbioportal.org) provides a Web resource for exploring, visualizing, and analyzing multidimensional cancer genomics data. The portal reduces molecular profiling data from cancer tissues and cell lines into readily understandable genetic, epigenetic, gene expression, and proteomic events. The query interface combined with customized data storage enables researchers to interactively explore genetic alterations across samples, genes, and pathways and, when available in the underlying data, to link these to clinical outcomes. The portal provides graphical summaries of gene-level data from multiple platforms, network visualization and analysis, survival analysis, patient-centric queries, and software programmatic access. The intuitive Web interface of the portal makes complex cancer genomics profiles accessible to researchers and clinicians without requiring bioinformatics expertise, thus facilitating biological discoveries. Here, we provide a practical guide to the analysis and visualization features of the cBioPortal for Cancer Genomics.
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            Is Open Access

            The zebrafish reference genome sequence and its relationship to the human genome.

            Zebrafish have become a popular organism for the study of vertebrate gene function. The virtually transparent embryos of this species, and the ability to accelerate genetic studies by gene knockdown or overexpression, have led to the widespread use of zebrafish in the detailed investigation of vertebrate gene function and increasingly, the study of human genetic disease. However, for effective modelling of human genetic disease it is important to understand the extent to which zebrafish genes and gene structures are related to orthologous human genes. To examine this, we generated a high-quality sequence assembly of the zebrafish genome, made up of an overlapping set of completely sequenced large-insert clones that were ordered and oriented using a high-resolution high-density meiotic map. Detailed automatic and manual annotation provides evidence of more than 26,000 protein-coding genes, the largest gene set of any vertebrate so far sequenced. Comparison to the human reference genome shows that approximately 70% of human genes have at least one obvious zebrafish orthologue. In addition, the high quality of this genome assembly provides a clearer understanding of key genomic features such as a unique repeat content, a scarcity of pseudogenes, an enrichment of zebrafish-specific genes on chromosome 4 and chromosomal regions that influence sex determination.
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              The RASopathies.

              The RASopathies are a clinically defined group of medical genetic syndromes caused by germline mutations in genes that encode components or regulators of the Ras/mitogen-activated protein kinase (MAPK) pathway. These disorders include neurofibromatosis type 1, Noonan syndrome, Noonan syndrome with multiple lentigines, capillary malformation-arteriovenous malformation syndrome, Costello syndrome, cardio-facio-cutaneous syndrome, and Legius syndrome. Because of the common underlying Ras/MAPK pathway dysregulation, the RASopathies exhibit numerous overlapping phenotypic features. The Ras/MAPK pathway plays an essential role in regulating the cell cycle and cellular growth, differentiation, and senescence, all of which are critical to normal development. Therefore, it is not surprising that Ras/MAPK pathway dysregulation has profound deleterious effects on both embryonic and later stages of development. The Ras/MAPK pathway has been well studied in cancer and is an attractive target for small-molecule inhibition to treat various malignancies. The use of these molecules to ameliorate developmental defects in the RASopathies is under consideration.
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                Author and article information

                Journal
                American Journal of Medical Genetics Part A
                Am J Med Genet
                Wiley
                1552-4825
                1552-4833
                January 21 2020
                April 2020
                January 08 2020
                April 2020
                : 182
                : 4
                : 866-876
                Affiliations
                [1 ]Pediatric Oncology Branch, Center for Cancer ResearchNational Cancer Institute Bethesda Maryland
                [2 ]Clinical Genetics Branch, Division of Cancer Epidemiology and GeneticsNational Cancer Institute Rockville Maryland
                [3 ]Department of Genetics, Division of PediatricsAl duPont Hospital for Children Wilmington Delaware
                [4 ]Department of PediatricsMindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai New York New York
                [5 ]Department of Genetics and Genomic SciencesMindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai New York New York
                [6 ]RASopathies Network Altadena California
                [7 ]Medical Genomics and Metabolic Genetics BranchNational Human Genome Research Institute Bethesda Maryland
                [8 ]NCI RAS InitiativeFrederick National Laboratory for Cancer Research Frederick Maryland
                [9 ]Laboratory for Neurofibromatosis Research, Department of Human GeneticsKU Leuven University Hospital Leuven Belgium
                [10 ]Department of PediatricsBenioff Children's Hospital and the Helen Diller Family Comprehensive Cancer Center, University of California San Francisco San Francisco California
                [11 ]Laboratory of Cell and Developmental SignalingCenter for Cancer Research, National Cancer Institute Frederick Maryland
                [12 ]Department of Pediatrics, Division of Genomic MedicineUniversity of California Davis Sacramento California
                [13 ]Center for Drug Evaluation and ResearchFood and Drug Administration Rockville Maryland
                Article
                10.1002/ajmg.a.61485
                7456498
                31913576
                03d0bac7-0fd5-4c0d-94d2-536c93d3a44c
                © 2020

                http://onlinelibrary.wiley.com/termsAndConditions#vor

                http://doi.wiley.com/10.1002/tdm_license_1.1

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