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      Identification of sulphonamide-tethered N-((triazol-4-yl)methyl)isatin derivatives as inhibitors of SARS-CoV-2 main protease

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          Abstract

          SARS-CoV-2 pandemic in the end of 2019 led to profound consequences on global health and economy. Till producing successful vaccination strategies, the healthcare sectors suffered from the lack of effective therapeutic agents that could control the spread of infection. Thus, academia and the pharmaceutical sector prioritise SARS-CoV-2 antiviral drug discovery. Here, we exploited previous reports highlighting the anti-SARS-CoV-2 activities of isatin-based molecules to develop novel triazolo-isatins for inhibiting main protease (Mpro) of the virus, a crucial enzyme for its replication in the host cells. Particularly, sulphonamide 6b showed promising inhibitory activity with an IC 50= 0.249 µM. Additionally, 6b inhibited viral cell proliferation with an IC 50 of 4.33 µg/ml, and was non-toxic to VERO-E6 cells (CC50 = 564.74 µg/ml) displaying a selectivity index of 130.4. In silico analysis of 6b disclosed its ability to interact with key residues in the enzyme active site, supporting the obtained in vitro findings.

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          AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.

          AutoDock Vina, a new program for molecular docking and virtual screening, is presented. AutoDock Vina achieves an approximately two orders of magnitude speed-up compared with the molecular docking software previously developed in our lab (AutoDock 4), while also significantly improving the accuracy of the binding mode predictions, judging by our tests on the training set used in AutoDock 4 development. Further speed-up is achieved from parallelism, by using multithreading on multicore machines. AutoDock Vina automatically calculates the grid maps and clusters the results in a way transparent to the user. Copyright 2009 Wiley Periodicals, Inc.
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            GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

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              Rapid colorimetric assay for cellular growth and survival: Application to proliferation and cytotoxicity assays

              A tetrazolium salt has been used to develop a quantitative colorimetric assay for mammalian cell survival and proliferation. The assay detects living, but not dead cells and the signal generated is dependent on the degree of activation of the cells. This method can therefore be used to measure cytotoxicity, proliferation or activation. The results can be read on a multiwell scanning spectrophotometer (ELISA reader) and show a high degree of precision. No washing steps are used in the assay. The main advantages of the colorimetric assay are its rapidity and precision, and the lack of any radioisotope. We have used the assay to measure proliferative lymphokines, mitogen stimulations and complement-mediated lysis.
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                Author and article information

                Journal
                J Enzyme Inhib Med Chem
                J Enzyme Inhib Med Chem
                Journal of Enzyme Inhibition and Medicinal Chemistry
                Taylor & Francis
                1475-6366
                1475-6374
                11 July 2023
                2023
                11 July 2023
                : 38
                : 1
                : 2234665
                Affiliations
                [a ]Department of Pharmacognosy, Faculty of Pharmacy, Kafrelsheikh University , Kafrelsheikh, Egypt
                [b ]Scientific Research and Innovation Support Unit, Faculty of Pharmacy, Kafrelsheikh University , Kafrelsheikh, Egypt
                [c ]Pharmaceutical Chemistry Department, Faculty of Pharmacy, Cairo University , Cairo, Egypt
                [d ]Chemistry of Natural and microbial products, National Research center , Egypt
                [e ]Department of Bioscience, University of Kent , Canterbury, UK
                [f ]Department of Medicinal Chemistry, Faculty of Pharmacy, King Salman International University (KSIU) , Egypt
                [g ]Department of Microbiology and Immunology, Faculty of Pharmacy, Kafrelsheikh University , Kafrelsheikh, Egypt
                [h ]Department of Pharmacognosy, Faculty of Pharmacy, Mansoura University , Mansoura, Egypt
                [i ]Department of NEUROFARBA, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence , Firenze, Italy
                [j ]Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Kafrelsheikh University , Kafrelsheikh, Egypt
                [k ]School of Biotechnology, Badr University in Cairo , Badr City, Egypt
                Author notes

                Supplemental data for this article can be accessed online at https://doi.org/10.1080/14756366.2023.2234665.

                Wagdy M. Eldehna wagdy2000@ 123456gmail.com Faculty of Pharmacy, Kafrelsheikh University , Kafrelsheikh, Egypt
                Author information
                https://orcid.org/0000-0001-5481-2053
                https://orcid.org/0000-0002-5851-3306
                https://orcid.org/0000-0003-4262-0323
                https://orcid.org/0000-0001-6996-4017
                Article
                2234665
                10.1080/14756366.2023.2234665
                10405867
                37434404
                080201ad-2279-416a-a898-6752b6606a4b
                © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License ( http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.

                History
                Page count
                Figures: 7, Tables: 1, Pages: 11, Words: 7314
                Categories
                Research Article
                Research Article

                Pharmaceutical chemistry
                isatin derivatives,click chemistry,sars-cov-2,main protease,fret assay and moleuclar docking

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