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      A Comparative Assessment of the Influences of Human Impacts on Soil Cd Concentrations Based on Stepwise Linear Regression, Classification and Regression Tree, and Random Forest Models

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          Abstract

          Soil cadmium (Cd) contamination has attracted a great deal of attention because of its detrimental effects on animals and humans. This study aimed to develop and compare the performances of stepwise linear regression (SLR), classification and regression tree (CART) and random forest (RF) models in the prediction and mapping of the spatial distribution of soil Cd and to identify likely sources of Cd accumulation in Fuyang County, eastern China. Soil Cd data from 276 topsoil (0–20 cm) samples were collected and randomly divided into calibration (222 samples) and validation datasets (54 samples). Auxiliary data, including detailed land use information, soil organic matter, soil pH, and topographic data, were incorporated into the models to simulate the soil Cd concentrations and further identify the main factors influencing soil Cd variation. The predictive models for soil Cd concentration exhibited acceptable overall accuracies (72.22% for SLR, 70.37% for CART, and 75.93% for RF). The SLR model exhibited the largest predicted deviation, with a mean error (ME) of 0.074 mg/kg, a mean absolute error (MAE) of 0.160 mg/kg, and a root mean squared error (RMSE) of 0.274 mg/kg, and the RF model produced the results closest to the observed values, with an ME of 0.002 mg/kg, an MAE of 0.132 mg/kg, and an RMSE of 0.198 mg/kg. The RF model also exhibited the greatest R 2 value (0.772). The CART model predictions closely followed, with ME, MAE, RMSE, and R 2 values of 0.013 mg/kg, 0.154 mg/kg, 0.230 mg/kg and 0.644, respectively. The three prediction maps generally exhibited similar and realistic spatial patterns of soil Cd contamination. The heavily Cd-affected areas were primarily located in the alluvial valley plain of the Fuchun River and its tributaries because of the dramatic industrialization and urbanization processes that have occurred there. The most important variable for explaining high levels of soil Cd accumulation was the presence of metal smelting industries. The good performance of the RF model was attributable to its ability to handle the non-linear and hierarchical relationships between soil Cd and environmental variables. These results confirm that the RF approach is promising for the prediction and spatial distribution mapping of soil Cd at the regional scale.

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          Random forests for classification in ecology.

          Classification procedures are some of the most widely used statistical methods in ecology. Random forests (RF) is a new and powerful statistical classifier that is well established in other disciplines but is relatively unknown in ecology. Advantages of RF compared to other statistical classifiers include (1) very high classification accuracy; (2) a novel method of determining variable importance; (3) ability to model complex interactions among predictor variables; (4) flexibility to perform several types of statistical data analysis, including regression, classification, survival analysis, and unsupervised learning; and (5) an algorithm for imputing missing values. We compared the accuracies of RF and four other commonly used statistical classifiers using data on invasive plant species presence in Lava Beds National Monument, California, USA, rare lichen species presence in the Pacific Northwest, USA, and nest sites for cavity nesting birds in the Uinta Mountains, Utah, USA. We observed high classification accuracy in all applications as measured by cross-validation and, in the case of the lichen data, by independent test data, when comparing RF to other common classification methods. We also observed that the variables that RF identified as most important for classifying invasive plant species coincided with expectations based on the literature.
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            Assessing heavy metal sources in agricultural soils of an European Mediterranean area by multivariate analysis.

            According to the European Thematic Strategy for Soil Protection, the characterization of the content and source of heavy metals in soils are necessary to establish quality standards on a regional level that allow the detection of sampling sites affected by pollution. In relation to this, the surface horizons of 54 agricultural soils under vegetable crops in the Alicante province (Spain), a representative area of the European Mediterranean region, were sampled to determine the content of Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn. Analytical determinations were performed by atomic absorption spectroscopy after microwave sample digestion in acid solution. Results indicated that heavy metal levels were similar to those reported by authors working on agricultural soils from other parts of the Mediterranean region, with the exception of Cu and Pb in some samples. Multivariate analysis (principal component analysis and cluster analysis) was performed to identify a common source for heavy metals. Moreover, soil properties were determined in order to characterize agricultural soils and to analyze relationships between heavy metal contents and soil properties. The content of Co, Cr, Fe, Mn, Ni and Zn were associated with parent rocks and corresponded to the first principal component called the lithogenic component. A significant correlation was found between lithogenic metals and some soil properties such as soil organic matter, clay content, and carbonates, indicating an important interaction among them. On the other hand, elements such as Cd, Cu and Pb were related to anthropic activities and comprised the second (Cu and Pb) and third principal components (Cd), designated the anthropogenic components. Generally, Cd, Cu and Pb showed a lower correlation with soil properties due to the fact that they remain in available forms in these agricultural soils. Taking into account these results and other achieved in other parts of the European Mediterranean region, it can be concluded that soil quality standards are highly needed to declare soils affected by human induced pollution. This is particularly relevant for anthropogenic metals (Cd, Cu and Pb, and in some areas also Zn). Further research in other agricultural areas of the region would improve the basis for proposing such soil quality standards.
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              Heavy metals in urban soils with various types of land use in Beijing, China.

              Heavy metal concentrations of Cd, Cr, Cu, Ni, Pb and Zn were investigated for 127 urban soil samples collected from business area (BA), classical garden (CG), culture and education area (CEA), public green space (PGS), residential area (RA) and roadside area (RSA) in Beijing. The distribution of Cd, Cu, Pb and Zn was mainly affected by anthropogenic sources, with their mean concentrations much higher than the background values of Beijing, while Cr and Ni were from natural sources. Among the 6 types of land use, the concentrations of Cd, Cu, Pb and Zn in CG were significantly higher than those in the other 5 types of land use (p<0.05), which were due to their historical use such as pigments, wood preservation and brassware. For the other 5 types of land use except CG, the mean concentration of Cd in RSA was significantly higher than those in BA, CEA, PGS and RA (p<0.05), suggesting Cd was mainly from traffic sources. The distribution maps revealed that the concentrations of Cu, Pb and Zn showed decreasing trends from the center to the suburb of Beijing, they increased with the age of the urban area. Copyright © 2011 Elsevier B.V. All rights reserved.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                10 March 2016
                2016
                : 11
                : 3
                : e0151131
                Affiliations
                [1 ]Institute of Rural Development, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
                [2 ]School of Marine Sciences, Ningbo University, Ningbo, China
                [3 ]Institute of Digital Agriculture, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
                [4 ]Institute of Remote Sensing and Information System Application, Zhejiang University, Hangzhou, China
                [5 ]Department of Geography, University of Cambridge, Cambridge, United Kingdom
                University of Vigo, SPAIN
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Conceived and designed the experiments: LFQ. Performed the experiments: LFQ Kai Wang. Analyzed the data: LFQ Kai Wang. Contributed reagents/materials/analysis tools: WLL Ke Wang. Wrote the paper: LFQ WH GSA. Obtained permission for use of original data: Ke Wang.

                Article
                PONE-D-15-44762
                10.1371/journal.pone.0151131
                4786095
                26964095
                0dd892b5-b90f-42ee-b161-911e5278ae9a
                © 2016 Qiu et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 29 October 2015
                : 24 February 2016
                Page count
                Figures: 5, Tables: 4, Pages: 16
                Funding
                This study was financially supported by National Natural Science Foundation of China (no. 41401595) and National Science and Technology Support Program (no. 2015BAL02B03).
                Categories
                Research Article
                Earth Sciences
                Geography
                Human Geography
                Land Use
                Social Sciences
                Human Geography
                Land Use
                Biology and Life Sciences
                Agriculture
                Agricultural Soil Science
                Ecology and Environmental Sciences
                Soil Science
                Agricultural Soil Science
                Research and Analysis Methods
                Mathematical and Statistical Techniques
                Statistical Methods
                Regression Analysis
                Linear Regression Analysis
                Physical Sciences
                Mathematics
                Statistics (Mathematics)
                Statistical Methods
                Regression Analysis
                Linear Regression Analysis
                Research and Analysis Methods
                Mathematical and Statistical Techniques
                Statistical Methods
                Forecasting
                Physical Sciences
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                Statistics (Mathematics)
                Statistical Methods
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                Biology and Life Sciences
                Ecology
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                Ecological Remediation
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                Ecology
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                Asia
                China
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                Computer and Information Sciences
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                Engineering and Technology
                Management Engineering
                Decision Analysis
                Decision Trees
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                Decision Analysis
                Decision Trees
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