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      Distemper, extinction, and vaccination of the Amur tiger

      research-article
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      Proceedings of the National Academy of Sciences of the United States of America
      National Academy of Sciences
      Amur tiger, Panthera tigris altaica, canine distemper virus, wildlife vaccination, extinction

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          Significance

          The decline and progressive fragmentation of many threatened populations increase extinction vulnerability due to outbreaks of infectious disease. Vaccination is one of the few tools available to mitigate these threats, but its use is often hampered by insufficient epidemiological understanding and historic controversies over endangered wildlife vaccination. Using the example of Amur tigers and CDV, we describe a holistic approach to select appropriate disease mitigation strategies based on key epidemiological evidence from the field. We then assess the protection of vaccinated tigers against the locally circulating CDV strain and use modeling to compare the efficacy and cost of potential vaccination programs. This practical approach provides conservation managers with an evidence-based rationale to address disease-mediated extinction risks for threatened wildlife populations.

          Abstract

          Canine distemper virus (CDV) has recently emerged as an extinction threat for the endangered Amur tiger ( Panthera tigris altaica). CDV is vaccine-preventable, and control strategies could require vaccination of domestic dogs and/or wildlife populations. However, vaccination of endangered wildlife remains controversial, which has led to a focus on interventions in domestic dogs, often assumed to be the source of infection. Effective decision making requires an understanding of the true reservoir dynamics, which poses substantial challenges in remote areas with diverse host communities. We carried out serological, demographic, and phylogenetic studies of dog and wildlife populations in the Russian Far East to show that a number of wildlife species are more important than dogs, both in maintaining CDV and as sources of infection for tigers. Critically, therefore, because CDV circulates among multiple wildlife sources, dog vaccination alone would not be effective at protecting tigers. We show, however, that low-coverage vaccination of tigers themselves is feasible and would produce substantive reductions in extinction risks. Vaccination of endangered wildlife provides a valuable component of conservation strategies for endangered species.

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          Most cited references44

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          jModelTest 2: more models, new heuristics and parallel computing.

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            MRBAYES: Bayesian inference of phylogenetic trees

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              A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

              The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximum- likelihood principle, which clearly satisfies these requirements. The core of this method is a simple hill-climbing algorithm that adjusts tree topology and branch lengths simultaneously. This algorithm starts from an initial tree built by a fast distance-based method and modifies this tree to improve its likelihood at each iteration. Due to this simultaneous adjustment of the topology and branch lengths, only a few iterations are sufficient to reach an optimum. We used extensive and realistic computer simulations to show that the topological accuracy of this new method is at least as high as that of the existing maximum-likelihood programs and much higher than the performance of distance-based and parsimony approaches. The reduction of computing time is dramatic in comparison with other maximum-likelihood packages, while the likelihood maximization ability tends to be higher. For example, only 12 min were required on a standard personal computer to analyze a data set consisting of 500 rbcL sequences with 1,428 base pairs from plant plastids, thus reaching a speed of the same order as some popular distance-based and parsimony algorithms. This new method is implemented in the PHYML program, which is freely available on our web page: http://www.lirmm.fr/w3ifa/MAAS/.
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                Author and article information

                Journal
                Proc Natl Acad Sci U S A
                Proc Natl Acad Sci U S A
                pnas
                pnas
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                15 December 2020
                23 November 2020
                23 November 2020
                : 117
                : 50
                : 31954-31962
                Affiliations
                [1] aCornell Wildlife Health Center, College of Veterinary Medicine, Cornell University , Ithaca, NY 14853;
                [2] bBoyd Orr Centre for Population and Ecosystem Health, Institute of Biodiversity Animal Health and Comparative Medicine, University of Glasgow , Glasgow G12 8QQ, United Kingdom;
                [3] cWildlife Conservation Society , Bronx, NY 10460;
                [4] dFederal Scientific Center of the East Asia Terrestrial Biodiversity, Far Eastern Branch of Russian Academy of Sciences , Vladivostok 690022, Russia;
                [5] eLand of the Leopard National Park , Vladivostok 690068, Russia;
                [6] fZoological Society of London , London NW1 4RY, United Kingdom;
                [7] gPrimorskaya State Agricultural Academy , Ussuriisk 692510, Russia;
                [8] hUnited Administration of Lazovsky Zapovednik and Zov Tigra National Park, Lazo 692890, Russia;
                [9] iAutonomous Noncommercial Organization “Amur,” Lazo 692890, Russia;
                [10] jPacific Geographical Institute, Far Eastern Branch of the Russian Academy of Sciences , Vladivostok 690041, Russia;
                [11] kFar Eastern Federal University , Vladivostok 690091 Russia;
                [12] lA. N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences , Moscow 119071, Russia;
                [13] mMedical Research Council–University of Glasgow Centre for Virus Research , Glasgow G61 1QH, United Kingdom;
                [14] nDepartment of Comparative, Diagnostic, and Population Medicine, College of Veterinary Medicine, University of Florida , Gainesville, FL 32610;
                [15] oInstitute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences , Novosibirsk 630090, Russia
                Author notes
                1To whom correspondence may be addressed. Email: m.gilbert@ 123456cornell.edu .

                Edited by Peter J. Hudson, Pennsylvania State University, University Park, PA, and accepted by Editorial Board Member James A. Estes October 3, 2020 (received for review January 15, 2020)

                Author contributions: M. Gilbert, N.S., R.R., B.J.W., S.A.O., D.G.M., L.M., and S.C. designed research; M. Gilbert, N.S., O.U., M. Goncharuk, L.K., E.H.C., R.R., T.S., D.M., I.V.S., S.V.N., G.S.W., C.H., E.C.T., B.J.W., M.J.H., N.L., M.M., R.J.O., E.I.S., S.B., A.A.Y., and D.G.M. performed research; M. Gilbert, E.H.C., R.R., T.S., C.A.D., S.B.V., W.E.A., E.C.T., B.J.W., R.J.O., L.M., and S.C. analyzed data; and M. Gilbert, R.R., E.C.T., B.J.W., S.A.O., L.M., and S.C. wrote the paper.

                Author information
                https://orcid.org/0000-0002-9930-4383
                https://orcid.org/0000-0002-2342-1655
                https://orcid.org/0000-0003-2589-8091
                https://orcid.org/0000-0003-3658-1364
                https://orcid.org/0000-0002-3945-3862
                https://orcid.org/0000-0003-4054-9236
                https://orcid.org/0000-0001-6400-5108
                https://orcid.org/0000-0002-7317-3266
                https://orcid.org/0000-0002-2025-1937
                https://orcid.org/0000-0001-6673-4697
                https://orcid.org/0000-0002-9786-2349
                https://orcid.org/0000-0001-8814-4575
                https://orcid.org/0000-0003-1482-0889
                https://orcid.org/0000-0001-8912-3266
                https://orcid.org/0000-0002-4313-5023
                https://orcid.org/0000-0002-6636-4283
                https://orcid.org/0000-0001-6951-6070
                https://orcid.org/0000-0002-2315-4382
                https://orcid.org/0000-0001-8186-6049
                https://orcid.org/0000-0003-4420-8367
                https://orcid.org/0000-0002-0456-0959
                Article
                202000153
                10.1073/pnas.2000153117
                7749280
                33229566
                1035aade-dbf1-4604-a4d7-72c733639572
                Copyright © 2020 the Author(s). Published by PNAS.

                This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY).

                History
                Page count
                Pages: 9
                Funding
                Funded by: Morris Animal Foundation (MAF) 100001250
                Award ID: D13Z0-041
                Award Recipient : Martin Gilbert Award Recipient : Dale Miquelle
                Funded by: RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) 501100000268
                Award ID: BB/R004250/1
                Award Recipient : Martin Gilbert Award Recipient : Brian Willett Award Recipient : Margaret J Hosie Award Recipient : Nicola Logan Award Recipient : Sarah Cleaveland
                Funded by: RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) 501100000268
                Award ID: BB/F016786/1
                Award Recipient : Martin Gilbert Award Recipient : Brian Willett Award Recipient : Margaret J Hosie Award Recipient : Nicola Logan Award Recipient : Sarah Cleaveland
                Categories
                Biological Sciences
                Ecology
                From the Cover
                Custom metadata
                December 15, 2020

                amur tiger,panthera tigris altaica,canine distemper virus,wildlife vaccination,extinction

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