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      Discovery and bioinspired total syntheses of unprecedented sesquiterpenoid dimers unveiled bifurcating [4 + 2] cycloaddition and target differentiation of enantiomers†

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          Abstract

          [4 + 2] cycloaddition has led to diverse polycyclic chiral architectures, serving as novel sources for organic synthesis and biological exploration. Here, an unprecedented class of cadinane sesquiterpene [4 + 2] dimers, henryinins A–E (1–5), with a unique 6/6/6/6/6-fused pentacyclic system, were isolated from Schisandra henryi. The divergent total syntheses of compounds 1–5 and their enantiomers (6–10) were concisely accomplished in eight linear steps using a protection-free approach. Mechanistic studies illustrated the origin of selectivity in the key [4 + 2] cycloaddition as well as the inhibition of reaction pathway bifurcation via desymmetrization. The chemical proteomics results showed that a pair of enantiomers shared common targets (PRDX5 C100 and BLMH C73) and had unique targets (USP45 C588 for 4 and COG7 C419 for 9). This work provides experimental evidence for the discovery of unprecedented cadinane dimers from selective Diels–Alder reaction and a powerful strategy to explore the biological properties of natural products.

          Abstract

          The [4 + 2] cycloaddition has led to diverse polycyclic chiral architectures, serving as novel sources for organic synthesis and biological exploration.

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          Most cited references61

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          Lessons from natural molecules.

          Natural products have inspired chemists and physicians for millennia. Their rich structural diversity and complexity has prompted synthetic chemists to produce them in the laboratory, often with therapeutic applications in mind, and many drugs used today are natural products or natural-product derivatives. Recent years have seen considerable advances in our understanding of natural-product biosynthesis. Coupled with improvements in approaches for natural-product isolation, characterization and synthesis, these could be opening the door to a new era in the investigation of natural products in academia and industry.
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            Quantitative reactivity profiling predicts functional cysteines in proteomes

            Cysteine is the most intrinsically nucleophilic amino acid in proteins, where its reactivity is tuned to perform diverse biochemical functions. The absence of a consensus sequence that defines functional cysteines in proteins has hindered their discovery and characterization. Here, we describe a proteomics method to quantitatively profile the intrinsic reactivity of cysteine residues en masse directly in native biological systems. Hyperreactivity was a rare feature among cysteines and found to specify a wide range of activities, including nucleophilic and reductive catalysis and sites of oxidative modification. Hyperreactive cysteines were identified in several proteins of uncharacterized function, including a residue conserved across eukaryotic phylogeny that we show is required for yeast viability and involved in iron-sulfur protein biogenesis. Finally, we demonstrate that quantitative reactivity profiling can also form the basis for screening and functional assignment of cysteines in computationally designed proteins, where it discriminated catalytically active from inactive cysteine hydrolase designs.
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              Analyzing Reaction Rates with the Distortion/Interaction‐Activation Strain Model

              Abstract The activation strain or distortion/interaction model is a tool to analyze activation barriers that determine reaction rates. For bimolecular reactions, the activation energies are the sum of the energies to distort the reactants into geometries they have in transition states plus the interaction energies between the two distorted molecules. The energy required to distort the molecules is called the activation strain or distortion energy. This energy is the principal contributor to the activation barrier. The transition state occurs when this activation strain is overcome by the stabilizing interaction energy. Following the changes in these energies along the reaction coordinate gives insights into the factors controlling reactivity. This model has been applied to reactions of all types in both organic and inorganic chemistry, including substitutions and eliminations, cycloadditions, and several types of organometallic reactions.
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                Author and article information

                Journal
                Chem Sci
                Chem Sci
                SC
                CSHCBM
                Chemical Science
                The Royal Society of Chemistry
                2041-6520
                2041-6539
                29 November 2023
                24 January 2024
                29 November 2023
                : 15
                : 4
                : 1260-1270
                Affiliations
                [a ] State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Yunnan Key Laboratory of Natural Medicinal Chemistry Kunming 650201 China punopematenzin@ 123456mail.kib.ac.cn
                [b ] Key Laboratory of Organofluorine Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences Shanghai200032 China xuexs@ 123456sioc.ac.cn
                [c ] Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University Beijing 100871 China
                Author notes
                [‡]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0002-9739-5234
                https://orcid.org/0000-0001-7551-3028
                https://orcid.org/0000-0002-6925-1268
                https://orcid.org/0000-0003-4541-8702
                https://orcid.org/0000-0001-5212-3000
                Article
                d3sc05233h
                10.1039/d3sc05233h
                10806648
                38274075
                19660972-1f36-4c68-b480-30b31b57d88a
                This journal is © The Royal Society of Chemistry
                History
                : 4 October 2023
                : 27 November 2023
                Page count
                Pages: 11
                Funding
                Funded by: National Natural Science Foundation of China, doi 10.13039/501100001809;
                Award ID: 22007089, U2002221
                Funded by: National Science Fund for Distinguished Young Scholars, doi 10.13039/501100014219;
                Award ID: 82325047
                Funded by: Natural Science Foundation of Yunnan Province, doi 10.13039/501100005273;
                Award ID: 202001AT070074
                Funded by: Youth Innovation Promotion Association of the Chinese Academy of Sciences, doi 10.13039/501100004739;
                Award ID: Unassigned
                Funded by: China Postdoctoral Science Foundation, doi 10.13039/501100002858;
                Award ID: 2023M730106
                Funded by: Yunnan Provincial Science and Technology Department, doi 10.13039/501100008871;
                Award ID: 202305AH340005
                Categories
                Chemistry
                Custom metadata
                Paginated Article

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