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      "My naturesound" - nature observations with sound recordings

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          Abstract

          Abstract
          Background

          Online systems for observation reporting by citizen scientists have been operating for many years. iNaturalist ( California Academy of Sciences 2016), eBird ( Cornell Lab of Ornithology 2016) and Observado ( Observation International 2016) are well-known international systems, Artportalen ( Swedish Species Information Centre 2016) and Artsobservasjoner ( Norwegian Biodiversity Information Centre 2016) are Scandinavian. In addition, databases and online solutions exist that are more directly research-oriented but still offer participation by citizen scientists, such as the PlutoF ( University of Tartu Natural History Museum 2016) platform. The University of Tartu Natural History Museum maintains the PlutoF platform ( Abarenkov et al. 2010) for storing and managing biodiversity data, including taxon observations. In 2014, development was started to integrate an observation app "Minu loodusheli"/"My naturesound" ( University of Tartu Natural History Museum 2017b) (My naturesound, Fig. 1) within PlutoF system. In 2017, an English language version of the app ( University of Tartu Natural History Museum 2017c) was launched that includes nearly all major sound-producing taxon groups in its taxonomy. The application also acts as a practical tool for collecting and publishing occurrence data for the Global Biodiversity Information Facility ( Global Biodiversity Information Facility 2017) in standardized Darwin Core format together with download links to the multimedia files. Although the sound recording ability of mobile phones opens new opportunities to validate taxon occurrences, current technological solutions limit the use of recordings in biodiversity research.

          The "My naturesound" allows the user to record taxon occurrences and to provide audio recordings as evidence. After installing the application, the user is promted to login with PlutoF system credentials or to register with PlutoF. The application is targeted primarely to citizen scientists, but researchers themselves can also use it as a tool for easy annotation of taxon occurrences.

          New information

          The dataset consists observation data of birds, amphibians and insects by citizen scientists with on site audio recordings. The dataset gives the possibility to analyze the suitablility of mobile devices for recording animal vocalizations and their use in reporting.

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          Most cited references14

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          PlutoF—a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences

          DNA sequences accumulating in the International Nucleotide Sequence Databases (INSD) form a rich source of information for taxonomic and ecological meta-analyses. However, these databases include many erroneous entries, and the data itself is poorly annotated with metadata, making it difficult to target and extract entries of interest with any degree of precision. Here we describe the web-based workbench PlutoF, which is designed to bridge the gap between the needs of contemporary research in biology and the existing software resources and databases. Built on a relational database, PlutoF allows remote-access rapid submission, retrieval, and analysis of study, specimen, and sequence data in INSD as well as for private datasets though web-based thin clients. In contrast to INSD, PlutoF supports internationally standardized terminology to allow very specific annotation and linking of interacting specimens and species. The sequence analysis module is optimized for identification and analysis of environmental ITS sequences of fungi, but it can be modified to operate on any genetic marker and group of organisms. The workbench is available at http://plutof.ut.ee.
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            Global Biodiversity Information Facility

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              iNaturalist

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                Author and article information

                Journal
                Biodivers Data J
                Biodivers Data J
                Biodiversity Data Journal
                Biodiversity Data Journal
                Biodiversity Data Journal
                Pensoft Publishers
                1314-2828
                2017
                20 October 2017
                : 5
                : e20200
                Affiliations
                [1 ] University of Tartu Natural History Museum and Botanical Garden, Tartu, Estonia
                [2 ] University of Tartu, Tartu, Estonia
                Author notes

                Academic editor: Yasen Mutafchiev

                Article
                Biodiversity Data Journal 4914
                10.3897/BDJ.5.e20200
                5665010
                1b07066d-0db3-4523-85d7-66e5e9c70d80
                Veljo Runnel, Marko Peterson, Allan Zirk

                This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 11 August 2017
                : 16 October 2017
                Page count
                Figures: 7, Tables: 0, References: 14
                Funding
                Funded by: EU BON: Building the European Biodiversity Observation Network 308454 501100000780 European Commission http://doi.org/10.13039/501100000780
                Categories
                Data Paper (Biosciences)
                Animalia
                Bioacoustics
                Biodiversity & Conservation
                World

                occurrence data,citizen science,biodiversity,sound recording,audio,multimedia,mobile application, aves , orthoptera , amphibia

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