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      Persister Cells – a Plausible Outcome of Neutral Coevolutionary Drift

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      Scientific Reports
      Nature Publishing Group UK

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          Abstract

          The phenomenon of bacterial persistence – a non-inherited antibiotic tolerance in a minute fraction of the bacterial population, was observed more than 70 years ago. Nowadays, it is suggested that “persister cells” undergo an alternative scenario of the cell cycle; however, pathways involved in its emergence are still not identified. We present a mathematically grounded scenario of such possibility. We have determined that population drift in the space of multiple neutrally coupled mutations, which we called “neutrally coupled co-evolution” (NCCE), leads to increased dynamic complexity of bacterial populations via appearance of cells capable of carrying out a single cell cycle in two or more alternative ways and that universal properties of the coupled transcription-translation system underlie this phenotypic multiplicity. According to our hypothesis, modern persister cells have derived from such cells and regulatory mechanisms that govern the consolidation of this phenomenon represented the trigger. We assume that the described type of neutrally coupled co-evolution could play an important role in the origin of extremophiles, both in bacteria and archaea.

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          Most cited references42

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          Bacterial persistence as a phenotypic switch.

          A fraction of a genetically homogeneous microbial population may survive exposure to stress such as antibiotic treatment. Unlike resistant mutants, cells regrown from such persistent bacteria remain sensitive to the antibiotic. We investigated the persistence of single cells of Escherichia coli with the use of microfluidic devices. Persistence was linked to preexisting heterogeneity in bacterial populations because phenotypic switching occurred between normally growing cells and persister cells having reduced growth rates. Quantitative measurements led to a simple mathematical description of the persistence switch. Inherent heterogeneity of bacterial populations may be important in adaptation to fluctuating environments and in the persistence of bacterial infections.
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            Persister cells, dormancy and infectious disease.

            Kim Lewis (2007)
            Several well-recognized puzzles in microbiology have remained unsolved for decades. These include latent bacterial infections, unculturable microorganisms, persister cells and biofilm multidrug tolerance. Accumulating evidence suggests that these seemingly disparate phenomena result from the ability of bacteria to enter into a dormant (non-dividing) state. The molecular mechanisms that underlie the formation of dormant persister cells are now being unravelled and are the focus of this Review.
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              The regulation of bacterial transcription initiation.

              Bacteria use their genetic material with great effectiveness to make the right products in the correct amounts at the appropriate time. Studying bacterial transcription initiation in Escherichia coli has served as a model for understanding transcriptional control throughout all kingdoms of life. Every step in the pathway between gene and function is exploited to exercise this control, but for reasons of economy, it is plain that the key step to regulate is the initiation of RNA-transcript formation.
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                Author and article information

                Contributors
                tamara@bionet.nsc.ru
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                25 September 2018
                25 September 2018
                2018
                : 8
                : 14309
                Affiliations
                ISNI 0000 0001 2254 1834, GRID grid.415877.8, Department of Systems Biology, Institute of Cytology and Genetics, , Russian Academy of Sciences, Siberian Branch, ; Novosibirsk, Russia
                Article
                32637
                10.1038/s41598-018-32637-2
                6156226
                30254316
                23449924-f45f-4fd0-a9ae-047936b0fc02
                © The Author(s) 2018

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 7 March 2018
                : 12 September 2018
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100002261, Russian Foundation for Basic Research (RFBR);
                Award ID: 16-01-00237a
                Award ID: 16-01-00237a
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100003182, Siberian Branch, Russian Academy of Sciences (Siberian Branch of the Russian Academy of Sciences);
                Award ID: 0324-2018-0017
                Award ID: 0324-2018-0017
                Award Recipient :
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