1
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Putative markers for the detection of early-stage bladder cancer selected by urine metabolomics

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Background

          Early detection of bladder cancer remains challenging because patients with early-stage bladder cancer usually have no incentive to take cytology or cystoscopy tests if they are asymptomatic. Our goal is to find non-invasive marker candidates that may help us gain insight into the metabolism of early-stage bladder cancer and be examined in routine health checks.

          Results

          We acquired urine samples from 124 patients diagnosed with early-stage bladder cancer or hernia (63 cancer patients and 61 controls). In which 100 samples were included in our marker discovery cohort, and the remaining 24 samples were included in our independent test cohort. We obtained metabolic profiles of 922 compounds of the samples by gas chromatography-mass spectrometry. Based on the metabolic profiles of the marker discovery cohort, we selected marker candidates using Wilcoxon rank-sum test with Bonferroni correction and leave-one-out cross-validation; we further excluded compounds detected in less than 60% of the bladder cancer samples. We finally selected eight putative markers. The abundance of all the eight markers in bladder cancer samples was high but extremely low in hernia samples. Moreover, the up-regulation of these markers might be in association with sugars and polyols metabolism.

          Conclusions

          In the present study, comparative urine metabolomics selected putative metabolite markers for the detection of early-stage bladder cancer. The suggested relations between early-stage bladder cancer and sugars and polyols metabolism may create opportunities for improving the detection of bladder cancer.

          Supplementary Information

          The online version contains supplementary material available at 10.1186/s12859-021-04235-z.

          Related collections

          Most cited references37

          • Record: found
          • Abstract: not found
          • Article: not found

          Individual Comparisons by Ranking Methods

            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Bladder Cancer Incidence and Mortality: A Global Overview and Recent Trends.

            Bladder cancer has become a common cancer globally, with an estimated 430 000 new cases diagnosed in 2012.
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              An Analysis of Variance Test for Normality (Complete Samples)

                Bookmark

                Author and article information

                Contributors
                clc2679@cgmh.org.tw
                kpwu@nycu.edu.tw
                Journal
                BMC Bioinformatics
                BMC Bioinformatics
                BMC Bioinformatics
                BioMed Central (London )
                1471-2105
                5 June 2021
                5 June 2021
                2021
                : 22
                : 305
                Affiliations
                [1 ]Institute of Biomedical Informatics, National Yang Ming Chiao Tung University, Taipei, 11221 Taiwan
                [2 ]GRID grid.145695.a, Molecular Medicine Research Center, , Chang Gung University, ; Taoyuan, 33302 Taiwan
                [3 ]Department of Life Sciences and Institute of Genome Sciences, National Yang Ming Chiao Tung University, Taipei, 11221 Taiwan
                [4 ]GRID grid.145695.a, Department of Biomedical Sciences, , Chang Gung University, ; Taoyuan, 33302 Taiwan
                [5 ]GRID grid.413801.f, ISNI 0000 0001 0711 0593, Department of Urology, , Chang Gung Memorial Hospital, ; Taoyuan, 33305 Taiwan
                [6 ]GRID grid.145695.a, College of Medicine, , Chang Gung University, ; Taoyuan, 33302 Taiwan
                Article
                4235
                10.1186/s12859-021-04235-z
                8180080
                34090341
                279ebecc-4a81-4e4b-9ca5-2369611bd58c
                © The Author(s) 2021

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 2 April 2021
                : 4 June 2021
                Categories
                Research
                Custom metadata
                © The Author(s) 2021

                Bioinformatics & Computational biology
                biomarkers,metabolomics,gas chromatography-mass spectrometry,omics data analysis,bioinformatics

                Comments

                Comment on this article