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      Editing an α-globin enhancer in primary human hematopoietic stem cells as a treatment for β-thalassemia

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          Abstract

          β-Thalassemia is one of the most common inherited anemias, with no effective cure for most patients. The pathophysiology reflects an imbalance between α- and β-globin chains with an excess of free α-globin chains causing ineffective erythropoiesis and hemolysis. When α-thalassemia is co-inherited with β-thalassemia, excess free α-globin chains are reduced significantly ameliorating the clinical severity. Here we demonstrate the use of CRISPR/Cas9 genome editing of primary human hematopoietic stem/progenitor (CD34+) cells to emulate a natural mutation, which deletes the MCS-R2 α-globin enhancer and causes α-thalassemia. When edited CD34+ cells are differentiated into erythroid cells, we observe the expected reduction in α-globin expression and a correction of the pathologic globin chain imbalance in cells from patients with β-thalassemia. Xenograft assays show that a proportion of the edited CD34+ cells are long-term repopulating hematopoietic stem cells, demonstrating the potential of this approach for translation into a therapy for β-thalassemia.

          Abstract

          β-thalassemia is characterised by the presence of an excess of α-globin chains, which contribute to erythrocyte pathology. Here the authors use CRISP/Cas9 to reduce α-globin expression in hematopoietic precursors, and show effectiveness in xenograft assays in mice.

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          Most cited references27

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          BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis

          Summary Enhancers, critical determinants of cellular identity, are commonly identified by correlative chromatin marks and gain-of-function potential, though only loss-of-function studies can demonstrate their requirement in the native genomic context. Previously we identified an erythroid enhancer of BCL11A, subject to common genetic variation associated with fetal hemoglobin (HbF) level, whose mouse ortholog is necessary for erythroid BCL11A expression. Here we develop pooled CRISPR-Cas9 guide RNA libraries to perform in situ saturating mutagenesis of the human and mouse enhancers. This approach reveals critical minimal features and discrete vulnerabilities of these enhancers. Despite conserved function of the composite enhancers, their architecture diverges. The crucial human sequences appear primate-specific. Through editing of primary human progenitors and mouse transgenesis, we validate the BCL11A erythroid enhancer as a target for HbF reinduction. The detailed enhancer map will inform therapeutic genome editing. The screening approach described here is generally applicable to functional interrogation of noncoding genomic elements.
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            Transcription factors LRF and BCL11A independently repress expression of fetal hemoglobin.

            Genes encoding human β-type globin undergo a developmental switch from embryonic to fetal to adult-type expression. Mutations in the adult form cause inherited hemoglobinopathies or globin disorders, including sickle cell disease and thalassemia. Some experimental results have suggested that these diseases could be treated by induction of fetal-type hemoglobin (HbF). However, the mechanisms that repress HbF in adults remain unclear. We found that the LRF/ZBTB7A transcription factor occupies fetal γ-globin genes and maintains the nucleosome density necessary for γ-globin gene silencing in adults, and that LRF confers its repressive activity through a NuRD repressor complex independent of the fetal globin repressor BCL11A. Our study may provide additional opportunities for therapeutic targeting in the treatment of hemoglobinopathies.
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              Hematopoietic stem cell transplantation in thalassemia major and sickle cell disease: indications and management recommendations from an international expert panel.

              Thalassemia major and sickle cell disease are the two most widely disseminated hereditary hemoglobinopathies in the world. The outlook for affected individuals has improved in recent years due to advances in medical management in the prevention and treatment of complications. However, hematopoietic stem cell transplantation is still the only available curative option. The use of hematopoietic stem cell transplantation has been increasing, and outcomes today have substantially improved compared with the past three decades. Current experience world-wide is that more than 90% of patients now survive hematopoietic stem cell transplantation and disease-free survival is around 80%. However, only a few controlled trials have been reported, and decisions on patient selection for hematopoietic stem cell transplantation and transplant management remain principally dependent on data from retrospective analyses and on the clinical experience of the transplant centers. This consensus document from the European Blood and Marrow Transplantation Inborn Error Working Party and the Paediatric Diseases Working Party aims to report new data and provide consensus-based recommendations on indications for hematopoietic stem cell transplantation and transplant management.
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                Author and article information

                Contributors
                doug.higgs@imm.ox.ac.uk
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                4 September 2017
                4 September 2017
                2017
                : 8
                : 424
                Affiliations
                [1 ]ISNI 0000 0004 1936 8948, GRID grid.4991.5, Medical Research Council (MRC) Molecular Hematology Unit, MRC Weatherall Institute of Molecular Medicine, , University of Oxford, ; Oxford, OX3 9DS UK
                [2 ]ISNI 0000 0000 8631 5388, GRID grid.45202.31, Department of Paediatrics, Faculty of Medicine, , University of Kelaniya, ; Ragama, 11010 Sri Lanka
                [3 ]ISNI 0000 0004 1936 8948, GRID grid.4991.5, MRC Weatherall Institute of Molecular Medicine, , University of Oxford, ; Oxford, OX3 9DS UK
                [4 ]ISNI 0000 0001 2287 695X, GRID grid.422270.1, Human Genetics Department, , National Institute of Health Dr. Ricardo Jorge, Av. Padre Cruz, ; Lisbon, 1649-016 Portugal
                [5 ]ISNI 0000 0001 2181 4263, GRID grid.9983.b, Institute of Environmental Health, Faculty of Medicine, , University of Lisbon, ; Av. Prof. Egas Moniz, Lisbon, 1649-028 Portugal
                [6 ]ISNI 0000 0001 0440 1440, GRID grid.410556.3, Oxford National Institute for Health Research Biomedical Research Centre, Blood Theme, , Oxford University Hospital, ; Oxford, OX3 9DU UK
                Author information
                http://orcid.org/0000-0002-0760-0418
                http://orcid.org/0000-0002-8955-7256
                http://orcid.org/0000-0003-3931-0914
                http://orcid.org/0000-0003-3579-8705
                Article
                479
                10.1038/s41467-017-00479-7
                5583283
                28871148
                2a8b5306-261f-4abd-9b8a-364349370a8e
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 5 April 2017
                : 30 June 2017
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