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      Fast and scalable likelihood maximization for Exponential Random Graph Models with local constraints

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          Abstract

          Exponential Random Graph Models (ERGMs) have gained increasing popularity over the years. Rooted into statistical physics, the ERGMs framework has been successfully employed for reconstructing networks, detecting statistically significant patterns in graphs, counting networked configurations with given properties. From a technical point of view, the ERGMs workflow is defined by two subsequent optimization steps: the first one concerns the maximization of Shannon entropy and leads to identify the functional form of the ensemble probability distribution that is maximally non-committal with respect to the missing information; the second one concerns the maximization of the likelihood function induced by this probability distribution and leads to its numerical determination. This second step translates into the resolution of a system of O( N) non-linear, coupled equations (with N being the total number of nodes of the network under analysis), a problem that is affected by three main issues, i.e. accuracy, speed and scalability. The present paper aims at addressing these problems by comparing the performance of three algorithms (i.e. Newton’s method, a quasi-Newton method and a recently-proposed fixed-point recipe) in solving several ERGMs, defined by binary and weighted constraints in both a directed and an undirected fashion. While Newton’s method performs best for relatively little networks, the fixed-point recipe is to be preferred when large configurations are considered, as it ensures convergence to the solution within seconds for networks with hundreds of thousands of nodes (e.g. the Internet, Bitcoin). We attach to the paper a Python code implementing the three aforementioned algorithms on all the ERGMs considered in the present work.

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          Most cited references39

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          Information Theory and Statistical Mechanics

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            Epidemic processes in complex networks

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              The role of the airline transportation network in the prediction and predictability of global epidemics

              The systematic study of large-scale networks has unveiled the ubiquitous presence of connectivity patterns characterized by large-scale heterogeneities and unbounded statistical fluctuations. These features affect dramatically the behavior of the diffusion processes occurring on networks, determining the ensuing statistical properties of their evolution pattern and dynamics. In this article, we present a stochastic computational framework for the forecast of global epidemics that considers the complete worldwide air travel infrastructure complemented with census population data. We address two basic issues in global epidemic modeling: (i) we study the role of the large scale properties of the airline transportation network in determining the global diffusion pattern of emerging diseases; and (ii) we evaluate the reliability of forecasts and outbreak scenarios with respect to the intrinsic stochasticity of disease transmission and traffic flows. To address these issues we define a set of quantitative measures able to characterize the level of heterogeneity and predictability of the epidemic pattern. These measures may be used for the analysis of containment policies and epidemic risk assessment.
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                Author and article information

                Contributors
                tiziano.squartini@imtlucca.it
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                27 July 2021
                27 July 2021
                2021
                : 11
                : 15227
                Affiliations
                [1 ]GRID grid.462365.0, ISNI 0000 0004 1790 9464, IMT School for Advanced Studies Lucca, ; P.zza San Francesco 19, 55100 Lucca, Italy
                [2 ]GRID grid.6530.0, ISNI 0000 0001 2300 0941, Physics Department and INFN, , ‘Tor Vergata’ University of Rome, ; 00133 Rome, Italy
                [3 ]GRID grid.7177.6, ISNI 0000000084992262, Institute for Advanced Study (IAS), , University of Amsterdam, ; Oude Turfmarkt 145, 1012 GC Amsterdam, The Netherlands
                Article
                93830
                10.1038/s41598-021-93830-4
                8316481
                34315920
                2db1e225-92d3-4e0b-8158-af0ee3e3558d
                © The Author(s) 2021

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 10 February 2021
                : 25 June 2021
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                © The Author(s) 2021

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                complex networks,statistical physics
                Uncategorized
                complex networks, statistical physics

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