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      Case Report: Comprehensive Management of Pneumocystis Jiroveci Pneumonia (PJP) and Secondary Infections of Multiple-Drug Resistant Enterobacter cloacae complex and Pseudomonas aeruginosa in a Kidney Transplant Recipient with Sulfonamide Allergies

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          Abstract

          We report a case of pneumocystis jiroveci pneumonia (PJP) in a 46-year-old woman, who previously underwent kidney transplant for chronic renal failure. She did not receive PJP prophylaxis treatment for the history of sulfonamide allergies. Four months after renal transplantation, the patient had cough, chest tightness, and shortness of breath. Procalcitonin (PCT) (0.06 ng/mL) and C-reactive protein (CRP) (5.33 mg/L) were normal, but the level of 1, 3-β-D-glucan test (G test, 193.89 pg/mL) were elevated. Metagenomics next-generation sequencing (mNGS) using bronchoalveolar lavage fluid (BALF) rapidly and accurately identified P. jiroveci. Through sulfonamide desensitization and sulfamethoxazole-trimethoprim (TMP-SMX) combined with caspofungin (CAS) treatment, PJP was controlled. However, the patients’ conditions were worsen for the hospital-acquired secondary pulmonary infection. A second BALF mNGS identified Enterobacter cloacae complex and Pseudomonas aeruginosa carrying carbapenem drug resistance genes, which were confirmed by subsequent culture and antimicrobial susceptibility test within 3 days. Finally, symptoms, such as chest tightness, cough, and shortness of breath, were improved and she was discharged after combined treatment with meropenem (MEM), polymyxin B (PMB), CAS, and TMP-SMX. In this case, mNGS, culture, and drug susceptibility testing were combined to monitor pathogenic microbial and adjust medication. At present, there are no case reports of mNGS use and sulfonamide desensitization in a kidney transplant recipient with sulfonamide allergies.

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          Microbiological Diagnostic Performance of Metagenomic Next-generation Sequencing When Applied to Clinical Practice

          Metagenomic next-generation sequencing (mNGS) was suggested to potentially replace traditional microbiological methodology because of its comprehensiveness. However, clinical experience with application of the test is relatively limited.
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            Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids

            We developed a metagenomic next-generation sequencing (mNGS) test using cell-free DNA from body fluids to identify pathogens. The performance of mNGS testing of 182 body fluids from 160 patients with acute illness was evaluated using two sequencing platforms in comparison to microbiological testing using culture, 16S bacterial PCR and/or 28S-internal transcribed ribosomal gene spacer (28S-ITS) fungal PCR. Test sensitivity and specificity of detection were 79 and 91% for bacteria and 91 and 89% for fungi, respectively, by Illumina sequencing; and 75 and 81% for bacteria and 91 and 100% for fungi, respectively, by nanopore sequencing. In a case series of 12 patients with culture/PCR-negative body fluids but for whom an infectious diagnosis was ultimately established, seven (58%) were mNGS positive. Real-time computational analysis enabled pathogen identification by nanopore sequencing in a median 50-min sequencing and 6-h sample-to-answer time. Rapid mNGS testing is a promising tool for diagnosis of unknown infections from body fluids.
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              Prophylaxis for Pneumocystis pneumonia (PCP) in non-HIV immunocompromised patients.

              Pneumocystis pneumonia (PCP) is a disease affecting immunocompromised patients. PCP among these patients is associated with significant morbidity and mortality.
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                Author and article information

                Journal
                Infect Drug Resist
                Infect Drug Resist
                idr
                Infection and Drug Resistance
                Dove
                1178-6973
                13 September 2023
                2023
                : 16
                : 6185-6193
                Affiliations
                [1 ]Department of Nephrology, The First Affiliated Hospital of Army Medical University , Chongqing, People’s Republic of China
                [2 ]Department of Scientific Affairs, Vision Medicals Center for Infection Diseases , Guangzhou, People’s Republic of China
                Author notes
                Correspondence: Hongwen Zhao; Qianguang Pan, Department of Nephrology, The First Affiliated Hospital of Army Medical University , 30 Gaotanyanzheng Street, Shapingba District, Chongqing, 400038, People’s Republic of China, Tel/Fax +8613983360655; +86 18584651157, Email zhaohw212@126.com; panqianguang@163.com
                [*]

                These authors contributed equally to this work

                Author information
                http://orcid.org/0009-0006-1424-856X
                http://orcid.org/0000-0002-6024-7430
                Article
                428890
                10.2147/IDR.S428890
                10505427
                37724091
                429d2d41-62d5-4f51-bf3d-9e8e367e0781
                © 2023 Zhu et al.

                This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License ( http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms ( https://www.dovepress.com/terms.php).

                History
                : 04 July 2023
                : 07 September 2023
                Page count
                Figures: 6, Tables: 6, References: 18, Pages: 9
                Funding
                Funded by: the Clinical Technological Innovation Training Project of Army Medical University;
                This work was supported by grants from the Clinical Technological Innovation Training Project of Army Medical University (CX2019LC104).
                Categories
                Case Report

                Infectious disease & Microbiology
                metagenomics next-generation sequencing,mngs,pneumocystis jiroveci pneumonia,pjp,sulfonamide allergies,sa,kidney transplant,kt,multiple drug-resistant enterobacter cloacae complex,mdr-ecc,multiple drug-resistant pseudomonas aeruginosa,mdr-pa

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