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      Dynamic frustrated charge hotspots created by charge density modulation sequester globular proteins into complex coacervates†

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      b , a , a , c , a , c , d , e , f , a , c , d , g ,
      Chemical Science
      The Royal Society of Chemistry

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          Abstract

          This study presents a simple strategy for the sequestration of globular proteins as clients into synthetic polypeptide-based complex coacervates as a scaffold, thereby recapitulating the scaffold-client interaction found in biological condensates. Considering the low net charges of scaffold proteins participating in biological condensates, the linear charge density ( σ) on the polyanion, polyethylene glycol- b-poly(aspartic acids), was reduced by introducing hydroxypropyl or butyl moieties as a charge-neutral pendant group. Complex coacervate prepared from the series of reduced- σ polyanions and the polycation, homo-poly- l-lysine, could act as a scaffold that sequestered various globular proteins with high encapsulation efficiency (>80%), which sometimes involved further agglomerations in the coacervates. The sequestration of proteins was basically driven by electrostatic interaction, and therefore depended on the ionic strength and charges of the proteins. However, based on the results of polymer partitioning in the coacervate in the presence or absence of proteins, charge ratios between cationic and anionic polymers were maintained at the charge ratio of unity. Therefore, the origin of the electrostatic interaction with proteins is considered to be dynamic frustrated charges in the complex coacervates created by non-neutralized charges on polymer chains. Furthermore, fluorescence recovery after photobleaching (FRAP) measurements showed that the interaction of side-chains and proteins changed the dynamic property of coacervates. It also suggested that the physical properties of the condensate are tunable before and after the sequestration of globular proteins. The present rational design approach of the scaffold-client interaction is helpful for basic life-science research and the applied frontier of artificial organelles.

          Abstract

          Reducing the charge density of linear synthetic polyion creates frustrated hotspots in complex coacervates, which allow the sequestration of globular proteins electrostatically mimicking “scaffold-client” interaction of biological condensate.

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          Most cited references51

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          Biomolecular condensates: organizers of cellular biochemistry

          In addition to membrane-bound organelles, eukaryotic cells feature various membraneless compartments, including the centrosome, the nucleolus and various granules. Many of these compartments form through liquid–liquid phase separation, and the principles, mechanisms and regulation of their assembly as well as their cellular functions are now beginning to emerge.
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            Phase Transition of a Disordered Nuage Protein Generates Environmentally Responsive Membraneless Organelles

            Summary Cells chemically isolate molecules in compartments to both facilitate and regulate their interactions. In addition to membrane-encapsulated compartments, cells can form proteinaceous and membraneless organelles, including nucleoli, Cajal and PML bodies, and stress granules. The principles that determine when and why these structures form have remained elusive. Here, we demonstrate that the disordered tails of Ddx4, a primary constituent of nuage or germ granules, form phase-separated organelles both in live cells and in vitro. These bodies are stabilized by patterned electrostatic interactions that are highly sensitive to temperature, ionic strength, arginine methylation, and splicing. Sequence determinants are used to identify proteins found in both membraneless organelles and cell adhesion. Moreover, the bodies provide an alternative solvent environment that can concentrate single-stranded DNA but largely exclude double-stranded DNA. We propose that phase separation of disordered proteins containing weakly interacting blocks is a general mechanism for forming regulated, membraneless organelles.
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              Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels.

              Eukaryotic cells contain assemblies of RNAs and proteins termed RNA granules. Many proteins within these bodies contain KH or RRM RNA-binding domains as well as low complexity (LC) sequences of unknown function. We discovered that exposure of cell or tissue lysates to a biotinylated isoxazole (b-isox) chemical precipitated hundreds of RNA-binding proteins with significant overlap to the constituents of RNA granules. The LC sequences within these proteins are both necessary and sufficient for b-isox-mediated aggregation, and these domains can undergo a concentration-dependent phase transition to a hydrogel-like state in the absence of the chemical. X-ray diffraction and EM studies revealed the hydrogels to be composed of uniformly polymerized amyloid-like fibers. Unlike pathogenic fibers, the LC sequence-based polymers described here are dynamic and accommodate heterotypic polymerization. These observations offer a framework for understanding the function of LC sequences as well as an organizing principle for cellular structures that are not membrane bound. Copyright © 2012 Elsevier Inc. All rights reserved.
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                Author and article information

                Journal
                Chem Sci
                Chem Sci
                SC
                CSHCBM
                Chemical Science
                The Royal Society of Chemistry
                2041-6520
                2041-6539
                19 May 2023
                21 June 2023
                19 May 2023
                : 14
                : 24
                : 6608-6620
                Affiliations
                [a ] Department of Applied Chemistry, Faculty of Engineering, Kyushu University 744 Moto-oka, Nishi-ku Fukuoka 819-0395 Japan kishimura.akihiro.776@ 123456m.kyushu-u.ac.jp
                [b ] Graduate School of Systems Life Sciences, Kyushu University 744 Moto-oka, Nishi-ku Fukuoka 819-0395 Japan
                [c ] Center for Future Chemistry, Kyushu University 744 Moto-oka, Nishi-ku Fukuoka 819-0395 Japan
                [d ] Center for Molecular Systems, Kyushu University 744 Moto-oka, Nishi-ku Fukuoka 819-0395 Japan
                [e ] Center for Advanced Medical Open Innovation, Kyushu University 3-1-1 Maidashi, Higashi-ku Fukuoka 812-8582 Japan
                [f ] Department of Biomedical Engineering, Chung Yuan Christian University 200 Chung Pei Rd. Chung Li Taiwan 32023 ROC
                [g ] RIKEN Center for Emergent Matter Science 2-1 Hirosawa, Wako Saitama 351-0198 Japan
                Author information
                https://orcid.org/0000-0002-1821-5427
                https://orcid.org/0000-0002-4957-6241
                https://orcid.org/0000-0002-0503-1418
                Article
                d3sc00993a
                10.1039/d3sc00993a
                10283495
                37350836
                4814987e-4c22-4f6f-865b-4122c65fe596
                This journal is © The Royal Society of Chemistry
                History
                : 22 February 2023
                : 19 May 2023
                Page count
                Pages: 13
                Funding
                Funded by: Japan Society for the Promotion of Science, doi 10.13039/501100001691;
                Award ID: JP22H02202
                Funded by: Kyushu University, doi 10.13039/501100004096;
                Award ID: Unassigned
                Funded by: Ministry of Education, Culture, Sports, Science and Technology, doi 10.13039/501100001700;
                Award ID: JP22H05429
                Categories
                Chemistry
                Custom metadata
                Paginated Article

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