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      Boosting I/O and visualization for exascale era using Hercule: test case on RAMSES

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          Abstract

          It has been clearly identified that I/O is one of the bottleneck to extend application for the exascale era. New concepts such as 'in transit' and 'in situ' visualization and analysis have been identified as key technologies to circumvent this particular issue. A new parallel I/O and data management library called Hercule, developed at CEA-DAM, has been integrated to Ramses, an AMR simulation code for self-gravitating fluids. Splitting the original Ramses output format in Hercule database formats dedicated to either checkpoints/restarts (HProt format) or post-processing (HDep format) not only improved I/O performance and scalability of the Ramses code but also introduced much more flexibility in the simulation outputs to help astrophysicists prepare their DMP (Data Management Plan). Furthermore, the very lightweight and purpose-specific post-processing format (HDep) will significantly improve the overall performance of analysis and visualization tools such as PyMSES 5. An introduction to the Hercule parallel I/O library as well as I/O benchmark results will be discussed.

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          Author and article information

          Journal
          04 June 2020
          Article
          2006.02759
          487178d4-0593-4f0e-8a2a-c6588b4fbc40

          http://arxiv.org/licenses/nonexclusive-distrib/1.0/

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          9 pages, 8 figures. Proceedings of ASTRONUM 2019, July 2019, Paris, France. Submitted to Journal of Physics Conference Series
          cs.DC astro-ph.CO astro-ph.GA cs.GR

          Cosmology & Extragalactic astrophysics,Galaxy astrophysics,Networking & Internet architecture,Graphics & Multimedia design

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