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      Classification and identification of Rhodobryum roseum Limpr. and its adulterants based on fourier-transform infrared spectroscopy (FTIR) and chemometrics

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          Abstract

          Fourier-transform infrared spectroscopy (FTIR) with the attenuated total reflectance technique was used to identify Rhodobryum roseum from its four adulterants. The FTIR spectra of six samples in the range from 4000 cm −1 to 600 cm −1 were obtained. The second-derivative transformation test was used to identify the small and nearby absorption peaks. A cluster analysis was performed to classify the spectra in a dendrogram based on the spectral similarity. Principal component analysis (PCA) was used to classify the species of six moss samples. A cluster analysis with PCA was used to identify different genera. However, some species of the same genus exhibited highly similar chemical components and FTIR spectra. Fourier self-deconvolution and discrete wavelet transform (DWT) were used to enhance the differences among the species with similar chemical components and FTIR spectra. Three scales were selected as the feature-extracting space in the DWT domain. The results show that FTIR spectroscopy with chemometrics is suitable for identifying Rhodobryum roseum and its adulterants.

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          Most cited references12

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          Protein structure by Fourier transform infrared spectroscopy: second derivative spectra.

          Second derivative Fourier transform infrared spectra of the proteins ribonuclease A, hemoglobin, and beta-lactoglobulin A (native and denatured) have been obtained in deuterium oxide solution from 1350 to 1800 cm-1. The relationship of the original spectra to their second derivatives is briefly discussed. In the second derivative spectra, clearly resolved peaks are observed which can be associated with the alpha-helix, beta-strands, and turns. No protein spectra with such resolution have heretofore been reported. Tentative assignments are proposed, and the observed peaks are related to the secondary structure of the proteins studied. The data appear to present the first direct spectroscopic evidence of turns in a native protein.
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            Protein secondary structures in water from second-derivative amide I infrared spectra.

            Infrared spectra have been obtained for 12 globular proteins in aqueous solution at 20 degrees C. The proteins studied, which vary widely in the relative amounts of different secondary structures present, include myoglobin, hemoglobin, immunoglobulin G, concanavalin A, lysozyme, cytochrome c, alpha-chymotrypsin, trypsin, ribonuclease A, alcohol dehydrogenase, beta 2-microglobulin, and human class I major histocompatibility complex antigen A2. Criteria for evaluating how successfully the spectra due to liquid and gaseous water are subtracted from the observed spectrum in the amide I region were developed. Comparisons of second-derivative amide I spectra with available crystal structure data provide both qualitative and quantitative support for assignments of infrared bands to secondary structures. Band frequency assignments assigned to alpha-helix, beta-sheet, unordered, and turn structures are highly consistent among all proteins and agree closely with predictions from theory. alpha-Helix and unordered structures can each be assigned to only one band whereas multiple bands are associated with beta-sheets and turns. These findings demonstrate a method of analysis of second-derivative amide I spectra whereby the frequencies of bands due to different secondary structures can be obtained. Furthermore, the band intensities obtained provide a useful method for estimating the relative amounts of different structures.
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              Phytochemical and biological studies of bryophytes.

              The bryophytes contain the Marchantiophyta (liverworts), Bryophyta (mosses) and Anthocerotophyta (hornworts). Of these, the Marchantiophyta have a cellular oil body which produce a number of mono-, sesqui- and di-terpenoids, aromatic compounds like bibenzyl, bis-bibenzyls and acetogenins. Most sesqui- and di-terpenoids obtained from liverworts are enantiomers of those found in higher plants. Many of these compounds display a characteristic odor, and can have interesting biological activities. These include: allergenic contact dermatitis, antimicrobial, antifungal and antiviral, cytotoxic, insecticidal, insect antifeedant, superoxide anion radical release, 5-lipoxygenase, calmodulin, hyaluronidase, cyclooxygenase, DNA polymerase β, and α-glucosidase and NO production inhibitory, antioxidant, piscicidal, neurotrophic and muscle relaxing activities among others. Each liverwort biosynthesizes unique components, which are valuable for their chemotaxonomic classification. Typical chemical structures and biological activity of the selected liverwort constituents as well as the hemi- and total synthesis of some biologically active compounds are summarized. Copyright © 2012 Elsevier Ltd. All rights reserved.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                16 February 2017
                2017
                : 12
                : 2
                : e0172359
                Affiliations
                [1 ]College of Life Science, Hebei Normal University, Shijiazhuang, China
                [2 ]Hebei College of Industry and Technology, Shijiazhuang, China
                Aligarh Muslim University, INDIA
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                • Conceptualization: ZC ZW JZ.

                • Data curation: ZC.

                • Formal analysis: ZC.

                • Funding acquisition: JZ.

                • Investigation: ZC ZW ZS.

                • Methodology: ZC ZW.

                • Project administration: ZS.

                • Resources: ZC ZW JZ.

                • Software: ZC ZW.

                • Supervision: JZ.

                • Validation: ZC ZW.

                • Visualization: ZW JZ.

                • Writing – original draft: ZC ZW.

                • Writing – review & editing: JZ.

                Author information
                http://orcid.org/0000-0003-3736-8709
                Article
                PONE-D-16-38568
                10.1371/journal.pone.0172359
                5313229
                28207900
                498764a8-458b-4616-80b5-162b74e1af88
                © 2017 Cao et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 26 September 2016
                : 4 February 2017
                Page count
                Figures: 6, Tables: 2, Pages: 14
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100001809, National Natural Science Foundation of China;
                Award ID: 31370237
                Award Recipient :
                This work was supported by Natural Science Foundation of China 31370237 (JZ), https://isisn.nsfc.gov.cn/egrantindex/funcindex/prjsearch-list#.
                Categories
                Research Article
                Biology and Life Sciences
                Organisms
                Plants
                Nonvascular Plants
                Mosses
                Research and Analysis Methods
                Spectrum Analysis Techniques
                Absorption Spectroscopy
                Engineering and Technology
                Signal Processing
                Research and Analysis Methods
                Mathematical and Statistical Techniques
                Statistical Methods
                Multivariate Analysis
                Principal Component Analysis
                Physical Sciences
                Mathematics
                Statistics (Mathematics)
                Statistical Methods
                Multivariate Analysis
                Principal Component Analysis
                Engineering and Technology
                Signal Processing
                Signal Filtering
                Research and Analysis Methods
                Spectrum Analysis Techniques
                Infrared Spectroscopy
                Fourier Transform Infrared Spectroscopy
                Physical Sciences
                Chemistry
                Chemical Compounds
                Organic Compounds
                Carbohydrates
                Physical Sciences
                Chemistry
                Organic Chemistry
                Organic Compounds
                Carbohydrates
                Physical Sciences
                Chemistry
                Chemical Compounds
                Organic Compounds
                Amides
                Physical Sciences
                Chemistry
                Organic Chemistry
                Organic Compounds
                Amides
                Custom metadata
                All relevant data are within the paper and its Supporting Information files.

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                Uncategorized

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