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      Mapping Change in Large Networks

      research-article
      1 , * , 1 , 2
      PLoS ONE
      Public Library of Science

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          Abstract

          Change is a fundamental ingredient of interaction patterns in biology, technology, the economy, and science itself: Interactions within and between organisms change; transportation patterns by air, land, and sea all change; the global financial flow changes; and the frontiers of scientific research change. Networks and clustering methods have become important tools to comprehend instances of these large-scale structures, but without methods to distinguish between real trends and noisy data, these approaches are not useful for studying how networks change. Only if we can assign significance to the partitioning of single networks can we distinguish meaningful structural changes from random fluctuations. Here we show that bootstrap resampling accompanied by significance clustering provides a solution to this problem. To connect changing structures with the changing function of networks, we highlight and summarize the significant structural changes with alluvial diagrams and realize de Solla Price's vision of mapping change in science: studying the citation pattern between about 7000 scientific journals over the past decade, we find that neuroscience has transformed from an interdisciplinary specialty to a mature and stand-alone discipline.

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          Uncovering the overlapping community structure of complex networks in nature and society

          Many complex systems in nature and society can be described in terms of networks capturing the intricate web of connections among the units they are made of. A key question is how to interpret the global organization of such networks as the coexistence of their structural subunits (communities) associated with more highly interconnected parts. Identifying these a priori unknown building blocks (such as functionally related proteins, industrial sectors and groups of people) is crucial to the understanding of the structural and functional properties of networks. The existing deterministic methods used for large networks find separated communities, whereas most of the actual networks are made of highly overlapping cohesive groups of nodes. Here we introduce an approach to analysing the main statistical features of the interwoven sets of overlapping communities that makes a step towards uncovering the modular structure of complex systems. After defining a set of new characteristic quantities for the statistics of communities, we apply an efficient technique for exploring overlapping communities on a large scale. We find that overlaps are significant, and the distributions we introduce reveal universal features of networks. Our studies of collaboration, word-association and protein interaction graphs show that the web of communities has non-trivial correlations and specific scaling properties.
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            Maps of random walks on complex networks reveal community structure

            To comprehend the multipartite organization of large-scale biological and social systems, we introduce a new information theoretic approach that reveals community structure in weighted and directed networks. The method decomposes a network into modules by optimally compressing a description of information flows on the network. The result is a map that both simplifies and highlights the regularities in the structure and their relationships. We illustrate the method by making a map of scientific communication as captured in the citation patterns of more than 6000 journals. We discover a multicentric organization with fields that vary dramatically in size and degree of integration into the network of science. Along the backbone of the network -- including physics, chemistry, molecular biology, and medicine -- information flows bidirectionally, but the map reveals a directional pattern of citation from the applied fields to the basic sciences.
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              NETWORKS OF SCIENTIFIC PAPERS.

              D. Price (1965)
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2010
                27 January 2010
                : 5
                : 1
                : e8694
                Affiliations
                [1 ]Department of Biology, University of Washington, Seattle, Washington, United States of America
                [2 ]Santa Fe Institute, Santa Fe, New Mexico, United States of America
                University of East Piedmont, Italy
                Author notes

                Conceived and designed the experiments: MR CTB. Performed the experiments: MR CTB. Analyzed the data: MR CTB. Contributed reagents/materials/analysis tools: MR CTB. Wrote the paper: MR CTB.

                Article
                09-PONE-RA-14363
                10.1371/journal.pone.0008694
                2811724
                20111700
                557c1d36-96b7-457b-bb3c-e7c786dd5238
                Rosvall, Bergstrom. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
                History
                : 20 November 2009
                : 17 December 2009
                Page count
                Pages: 7
                Categories
                Research Article
                Computer Science/Information Technology
                Mathematics/Mathematical Computing
                Physics/Interdisciplinary Physics

                Uncategorized
                Uncategorized

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