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      Viral evasion and subversion of pattern-recognition receptor signalling

      review-article
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      Nature Reviews. Immunology
      Nature Publishing Group UK

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          Key Points

          • Viruses are detected by different classes of pattern-recognition receptors (PRRs), including Toll-like receptors (TLRs), RIG-I-like receptors (RLRs) and cytoplasmic DNA receptors. This leads to the activation of downstream signalling pathways that culminate in the activation of transcription factors and the production of type I interferons (IFNs).

          • Investigating how viruses interact with PRR signalling pathways provides insights into how the pathways function, which host proteins are involved and how the pathways might be manipulated therapeutically.

          • TLRs and RLRs are inhibited in various ways by viruses: the main viral mechanism for inhibiting TLR signalling to be identified so far is the disabling of the TIR (TLR/interleukin-1 receptor)-domain-containing adaptor proteins, which are required for the activation of transcription factors. Although described only recently, RLRs have already been shown to be crucial for sensing viruses. Consequently, many viral strategies that are targeted against them have already been identified.

          • All PRR signalling pathways converge with the activation of IκB kinase (IKK) family members. So, direct inhibition of IKKs is an efficient viral strategy to disable multiple PRR pathways and it is used by many viruses.

          • The transcription factors that control IFN induction, IFN-regulatory factor 3 (IRF3), IRF7 and nuclear factor-κB, are also directly antagonized by viruses. IRF3 in particular is subject to virus-induced degradation.

          • Viruses also actively subvert TLRs to manipulate the host cytokine environment for their own benefit.

          Abstract

          This Review highlights how understanding the mechanisms by which viruses evade and subvert host signalling by pattern-recognition receptors has provided insights into the function of these signalling pathways, the host proteins that are involved and ways in which the pathways might be manipulated therapeutically.

          Abstract

          The expression of pattern-recognition receptors (PRRs) by immune and tissue cells provides the host with the ability to detect and respond to infection by viruses and other microorganisms. Significant progress has been made from studying this area, including the identification of PRRs, such as Toll-like receptors and RIG-I-like receptors, and the description of the molecular basis of their signalling pathways, which lead to the production of interferons and other cytokines. In parallel, common mechanisms used by viruses to evade PRR-mediated responses or to actively subvert these pathways for their own benefit are emerging. Accumulating evidence on how viral infection and PRR signalling pathways intersect is providing further insights into the function of the pathways involved, their constituent proteins and ways in which they could be manipulated therapeutically.

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          Most cited references84

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          RIG-I-mediated antiviral responses to single-stranded RNA bearing 5'-phosphates.

          Double-stranded RNA (dsRNA) produced during viral replication is believed to be the critical trigger for activation of antiviral immunity mediated by the RNA helicase enzymes retinoic acid-inducible gene I (RIG-I) and melanoma differentiation-associated gene 5 (MDA5). We showed that influenza A virus infection does not generate dsRNA and that RIG-I is activated by viral genomic single-stranded RNA (ssRNA) bearing 5'-phosphates. This is blocked by the influenza protein nonstructured protein 1 (NS1), which is found in a complex with RIG-I in infected cells. These results identify RIG-I as a ssRNA sensor and potential target of viral immune evasion and suggest that its ability to sense 5'-phosphorylated RNA evolved in the innate immune system as a means of discriminating between self and nonself.
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            Pattern recognition receptors TLR4 and CD14 mediate response to respiratory syncytial virus.

            The innate immune system contributes to the earliest phase of the host defense against foreign organisms and has both soluble and cellular pattern recognition receptors for microbial products. Two important members of this receptor group, CD14 and the Toll-like receptor (TLR) pattern recognition receptors, are essential for the innate immune response to components of Gram-negative and Gram-positive bacteria, mycobacteria, spirochetes and yeast. We now find that these receptors function in an antiviral response as well. The innate immune response to the fusion protein of an important respiratory pathogen of humans, respiratory syncytial virus (RSV), was mediated by TLR4 and CD14. RSV persisted longer in the lungs of infected TLR4-deficient mice compared to normal mice. Thus, a common receptor activation pathway can initiate innate immune responses to both bacterial and viral pathogens.
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              Shared and unique functions of the DExD/H-box helicases RIG-I, MDA5, and LGP2 in antiviral innate immunity.

              The cellular protein retinoic acid-inducible gene I (RIG-I) senses intracellular viral infection and triggers a signal for innate antiviral responses including the production of type I IFN. RIG-I contains a domain that belongs to a DExD/H-box helicase family and exhibits an N-terminal caspase recruitment domain (CARD) homology. There are three genes encoding RIG-I-related proteins in human and mouse genomes. Melanoma differentiation associated gene 5 (MDA5), which consists of CARD and a helicase domain, functions as a positive regulator, similarly to RIG-I. Both proteins sense viral RNA with a helicase domain and transmit a signal downstream by CARD; thus, these proteins share overlapping functions. Another protein, LGP2, lacks the CARD homology and functions as a negative regulator by interfering with the recognition of viral RNA by RIG-I and MDA5. The nonstructural protein 3/4A protein of hepatitis C virus blocks the signaling by RIG-I and MDA5; however, the V protein of the Sendai virus selectively abrogates the MDA5 function. These results highlight ingenious mechanisms for initiating antiviral innate immune responses and the action of virus-encoded inhibitors.
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                Author and article information

                Contributors
                agbowie@tcd.ie
                Journal
                Nat Rev Immunol
                Nat. Rev. Immunol
                Nature Reviews. Immunology
                Nature Publishing Group UK (London )
                1474-1733
                1474-1741
                2008
                : 8
                : 12
                : 911-922
                Affiliations
                GRID grid.8217.c, ISNI 0000 0004 1936 9705, School of Biochemistry and Immunology, Trinity College Dublin, ; 2 Dublin Ireland
                Article
                BFnri2436
                10.1038/nri2436
                7097711
                18989317
                560f9dec-7e6e-4b59-96a0-1de7c750c423
                © Nature Publishing Group 2008

                This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.

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                © Springer Nature Limited 2008

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