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      Combining multi‐omics analysis to identify host‐targeted targets for the control of Brucella infection

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          Abstract

          Human infections caused by Brucella (called brucellosis) are among the most common zoonoses worldwide with an estimated 500,000 cases each year. Since chronic Brucella infections are extremely difficult to treat, there is an urgent need for more effective therapeutics. As a facultative intracellular bacterium, Brucella is strictly parasitic in the host cell. Here, we performed proteomic and transcriptomic and metabolomic analyses on Brucella infected patients, mice and cells that provided an extensive “map” of physiological changes in brucellosis patients and characterized the metabolic pathways essential to the response to infection, as well as the associated cellular response and molecular mechanisms. This is the first report utilizing multi‐omics analysis to investigate the global response of proteins and metabolites associated with Brucella infection, and the data can provide a comprehensive insight to understand the mechanism of Brucella infection. We demonstrated that Brucella increased nucleotide synthesis in the host, consistent with increased biomass requirement. We also identified IMPDH2, a key regulatory complex that controls nucleotide synthesis during Brucella infection. Pharmacological targeting of IMPDH2, the rate‐limiting enzyme in guanine nucleotide biosynthesis, efficiently inhibits B. abortus growth both in vitro and in vivo. Through screening a library of natural products, we identified oxymatrine, an alkaloid obtained primarily from Sophora roots, is a novel and selective IMPDH2 inhibitor. In further in vitro bacterial inhibition assays, oxymatrine effectively inhibited the growth of B. abortus, which was impaired by exogenous supplementation of guanosine, a salvage pathway of purine nucleotides. This moderately potent, structurally novel compound may provide clues for further design and development of efficient IMPDH2 inhibitors and also demonstrates the potential of natural compounds from plants against Brucella.

          Abstract

          The infection caused by Brucella leads to a change in the host's metabolism, specifically to aerobic glycolysis. In this study, the researchers focused on investigating the role of inosine‐5'‐monophosphate dehydrogenase (IMPDH2), a crucial regulatory complex involved in controlling glucose and nucleotide metabolism during Brucella infection. The researchers determined that pharmacologically targeting IMPDH2 can effectively inhibit the growth of Brucella both in vitro and in vivo.

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          In vitro-transcribed antigen receptor mRNA nanocarriers for transient expression in circulating T cells in vivo

          Engineering chimeric antigen receptors (CAR) or T cell receptors (TCR) helps create disease-specific T cells for targeted therapy, but the cost and rigor associated with manufacturing engineered T cells ex vivo can be prohibitive, so programing T cells in vivo may be a viable alternative. Here we report an injectable nanocarrier that delivers in vitro-transcribed (IVT) CAR or TCR mRNA for transiently reprograming of circulating T cells to recognize disease-relevant antigens. In mouse models of human leukemia, prostate cancer and hepatitis B-induced hepatocellular carcinoma, repeated infusions of these polymer nanocarriers induce sufficient host T cells expressing tumor-specific CARs or virus-specific TCRs to cause disease regression at levels similar to bolus infusions of ex vivo engineered lymphocytes. Given their ease of manufacturing, distribution and administration, these nanocarriers, and the associated platforms, could become a therapeutic for a wide range of diseases.
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            PPARγ-mediated increase in glucose availability sustains chronic Brucella abortus infection in alternatively activated macrophages.

            Eradication of persistent intracellular bacterial pathogens with antibiotic therapy is often slow or incomplete. However, strategies to augment antibiotics are hampered by our poor understanding of the nutritional environment that sustains chronic infection. Here we show that the intracellular pathogen Brucella abortus survives and replicates preferentially in alternatively activated macrophages (AAMs), which are more abundant during chronic infection. A metabolic shift induced by peroxisome proliferator-activated receptor γ (PPARγ), which increases intracellular glucose availability, is identified as a causal mechanism promoting enhanced bacterial survival in AAMs. Glucose uptake was crucial for increased replication of B. abortus in AAMs, and for chronic infection, as inactivation of the bacterial glucose transporter gluP reduced both intracellular survival in AAMs and persistence in mice. Thus, a shift in intracellular nutrient availability induced by PPARγ promotes chronic persistence of B. abortus within AAMs, and targeting this pathway may aid in eradicating chronic infection. Copyright © 2013 Elsevier Inc. All rights reserved.
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              IMPDH2 promotes colorectal cancer progression through activation of the PI3K/AKT/mTOR and PI3K/AKT/FOXO1 signaling pathways

              Background Inosine 5′-monophosphate dehydrogenase type II (IMPDH2) was originally identified as an oncogene in several human cancers. However, the clinical significance and biological role of IMPDH2 remain poorly understood in colorectal cancer (CRC). Methods Quantitative real-time polymerase chain reaction (qPCR), western blotting analysis, the Cancer Genome Atlas (TCGA) data mining and immunohistochemistry were employed to examine IMPDH2 expression in CRC cell lines and tissues. A series of in-vivo and in-vitro assays were performed to demonstrate the function of IMPDH2 and its possible mechanisms in CRC. Results IMPDH2 was upregulated in CRC cells and tissues at both mRNA and protein level. High IMPDH2 expression was closely associated with T stage, lymph node state, distant metastasis, lymphovascular invasion and clinical stage, and significantly correlated with poor survival of CRC patients. Further study revealed that overexpression of IMPDH2 significantly promoted the proliferation, invasion, migration and epithelial-mesenchymal transition (EMT) of CRC cells in vitro and accelerated xenograft tumour growth in nude mice. On the contrary, knockdown of IMPDH2 achieved the opposite effect. Gene set enrichment analysis (GSEA) showed that the gene set related to cell cycle was linked to upregulation of IMPDH2 expression. Our study verified that overexpressing IMPDH2 could promote G1/S phase cell cycle transition through activation of PI3K/AKT/mTOR and PI3K/AKT/FOXO1 pathways and facilitate cell invasion, migration and EMT by regulating PI3K/AKT/mTOR pathway. Conclusions These results suggest that IMPDH2 plays an important role in the development and progression of human CRC and may serve as a novel prognostic biomarker and therapeutic target for CRC.
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                Author and article information

                Contributors
                baolidao@immu.edu.cn
                wulan@immu.edu.cn
                Journal
                Microb Biotechnol
                Microb Biotechnol
                10.1111/(ISSN)1751-7915
                MBT2
                Microbial Biotechnology
                John Wiley and Sons Inc. (Hoboken )
                1751-7915
                26 October 2023
                December 2023
                : 16
                : 12 , Part 2: End Hunger: Enhancing Crop Yields with Microbes ( doiID: 10.1111/mbt2.v16.12 )
                : 2345-2366
                Affiliations
                [ 1 ] TCM Hospital of Mongolian Medicine in Hohhot Hohhot China
                [ 2 ] Department of Pathology Affiliated Hospital of Inner Mongolia Medical University Hohhot China
                [ 3 ] Department of Pharmacy Affiliated Hospital of Inner Mongolia Medical University Hohhot China
                [ 4 ] Department of Laboratory Affiliated Hospital of Inner Mongolia Medical University Hohhot China
                [ 5 ] Department of Mongolian Medicine Inner Mongolia Xilin Gol League Mongolian Medical Hospital Xilinhaote China
                [ 6 ] Mongolia Medical School Inner Mongolia Medical University Hohhot China
                Author notes
                [*] [* ] Correspondence

                Lidao Bao and Lan Wu, TCM Hospital of Mongolian Medicine in Hohhot, Hohhot, Inner Mongolia, 010030, China.

                Email: baolidao@ 123456immu.edu.cn and wulan@ 123456immu.edu.cn

                Author information
                https://orcid.org/0000-0002-8485-3566
                Article
                MBT214307 MICROBIO-2023-221-RA
                10.1111/1751-7915.14307
                10686141
                37882474
                572aaecb-c6b8-48a6-a51c-1d3a0a5d7884
                © 2023 The Authors. Microbial Biotechnology published by Applied Microbiology International and John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 15 February 2023
                : 29 October 2022
                : 20 June 2023
                Page count
                Figures: 8, Tables: 0, Pages: 22, Words: 12705
                Funding
                Funded by: "Prairie Talents" Leading Talent Project in Inner Mongolia Autonomous Region
                Funded by: Inner Mongolia Autonomous Region "Prairie excellence" Project
                Funded by: Major Project of Natural Science Foundation of Inner Mongolia Autonomous Region
                Award ID: 2021ZD14
                Funded by: Natural Science Foundation of Inner Mongolia , doi 10.13039/501100004763;
                Award ID: 2020MS08046
                Funded by: Technology Planning Project of Inner Mongolia Autonomous Region
                Award ID: 2020GG0138
                Funded by: Western Light Young Scholars Program of the Chinese Academy of Sciences
                Funded by: Major projects of Inner Mongolia Natural Science Foundation
                Award ID: 2023ZD15
                Funded by: National Natural Science Foundation
                Award ID: 82160794
                Funded by: Major Project of Natural Science Foundation of Inner Mongolia Autonomous Region
                Award ID: 2021ZD14
                Funded by: Science and Technology Planning Project of Inner Mongolia Autonomous Region
                Award ID: 2020GG0138
                Categories
                Research Article
                Regular Issue
                Custom metadata
                2.0
                December 2023
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.3.5 mode:remove_FC converted:29.11.2023

                Biotechnology
                Biotechnology

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