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      Adsorption of C2H2-C2O3 on Si(001)

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      Brazilian Journal of Physics
      Sociedade Brasileira de Física

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          Abstract

          The adsorption of maleic anhydride on the Si(001) surface was investigated using the first-principles pseudopotential formalism. Our results indicate that C2H2-C2O3 adsorbs through a [2+2] cycloaddition of the C-C bond to the dangling bonds of Si-Si dimers, as observed for other small hydrocarbons. According to our calculations, the adsorption of a second maleic anhydride molecule will preferentially occur on first-neighbours Si-Si dimer sites in either the dimer chain our dimer row, i.e. considering a (4×2) reconstruction, C2H2-C2O3 can either form a linear chain or a zig-zag chain, depending on the growth conditions. Although both structures are found to be stable from the energetic point of view, only our STM theoretical images for the linear chain are comparable to available experimental data.

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          Handbook of Chemistry and Physics

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              Bifurcated hydrogen bonding and asymmetric fluctuations in a carbohydrate crystal studied via X-ray crystallography and computational analysis.

              The structure of the O-methyl glycoside of the naturally occurring 6-O-[(R)-1-carboxyethyl]-α-D-galactopyranose, C10H18O8, has been determined by X-ray crystallography at 100 K, supplementing the previously determined structure obtained at 293 K (Acta Crystallogr.1996, C52, 2285-2287). Molecular dynamics simulations of this glycoside were performed in the crystal environment with different numbers of units cells included in the primary simulation system at both 100 and 293 K. The calculated unit cell parameters and the intramolecular geometries (bonds, angles, and dihedrals) agree well with experimental results. Atomic fluctuations, including B-factors and anisotropies, are in good agreement with respect to the relative values on an atom-by-atom basis. In addition, the fluctuations increase with increasing simulation system size, with the simulated values converging to values lower than those observed experimentally indicating that the simulation model is not accounting for all possible contributions to the experimentally observed B-factors, which may be related to either the simulation time scale or size. In the simulations, the hydroxyl group of O7 is found to form bifurcated hydrogen bonds with O6 and O8 of an adjacent molecule, with the interactions dominated by the HO7-O6 interaction. Quantum mechanical calculations support this observation.
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                Author and article information

                Journal
                bjp
                Brazilian Journal of Physics
                Braz. J. Phys.
                Sociedade Brasileira de Física (São Paulo, SP, Brazil )
                0103-9733
                1678-4448
                June 2004
                : 34
                : 2b
                : 563-564
                Affiliations
                [03] orgnameUniversity of Exeter orgdiv1School of Physics UK
                [02] São Paulo SP orgnameUniversidade de São Paulo orgdiv1Instituto de Física Brazil
                [01] Brasília DF orgnameUniversidade de Brasília orgdiv1Instituto de Física Brazil
                Article
                S0103-97332004000400006 S0103-9733(04)03400206
                10.1590/S0103-97332004000400006
                58fc1b79-7fac-4af1-aabc-9356173579fc

                This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

                History
                : 31 March 2003
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 7, Pages: 2
                Product

                SciELO Brazil

                Self URI: Full text available only in PDF format (EN)

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