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      Biocontrol yeasts: mechanisms and applications

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          Abstract

          Yeasts occur in all environments and have been described as potent antagonists of various plant pathogens. Due to their antagonistic ability, undemanding cultivation requirements, and limited biosafety concerns, many of these unicellular fungi have been considered for biocontrol applications. Here, we review the fundamental research on the mechanisms (e.g., competition, enzyme secretion, toxin production, volatiles, mycoparasitism, induction of resistance) by which biocontrol yeasts exert their activity as plant protection agents. In a second part, we focus on five yeast species ( Candida oleophila, Aureobasidium pullulans, Metschnikowia fructicola, Cryptococcus albidus, Saccharomyces cerevisiae ) that are or have been registered for the application as biocontrol products. These examples demonstrate the potential of yeasts for commercial biocontrol usage, but this review also highlights the scarcity of fundamental studies on yeast biocontrol mechanisms and of registered yeast-based biocontrol products. Yeast biocontrol mechanisms thus represent a largely unexplored field of research and plentiful opportunities for the development of commercial, yeast-based applications for plant protection exist.

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          The online version of this article (10.1007/s11274-019-2728-4) contains supplementary material, which is available to authorized users.

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          Induced systemic resistance by beneficial microbes.

          Beneficial microbes in the microbiome of plant roots improve plant health. Induced systemic resistance (ISR) emerged as an important mechanism by which selected plant growth-promoting bacteria and fungi in the rhizosphere prime the whole plant body for enhanced defense against a broad range of pathogens and insect herbivores. A wide variety of root-associated mutualists, including Pseudomonas, Bacillus, Trichoderma, and mycorrhiza species sensitize the plant immune system for enhanced defense without directly activating costly defenses. This review focuses on molecular processes at the interface between plant roots and ISR-eliciting mutualists, and on the progress in our understanding of ISR signaling and systemic defense priming. The central role of the root-specific transcription factor MYB72 in the onset of ISR and the role of phytohormones and defense regulatory proteins in the expression of ISR in aboveground plant parts are highlighted. Finally, the ecological function of ISR-inducing microbes in the root microbiome is discussed.
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            Genome evolution across 1,011 Saccharomyces cerevisiae isolates

            Large-scale population genomic surveys are essential to explore the phenotypic diversity of natural populations. Here we report the whole-genome sequencing and phenotyping of 1,011 Saccharomyces cerevisiae isolates, which together provide an accurate evolutionary picture of the genomic variants that shape the species-wide phenotypic landscape of this yeast. Genomic analyses support a single ‘out-of-China’ origin for this species, followed by several independent domestication events. Although domesticated isolates exhibit high variation in ploidy, aneuploidy and genome content, genome evolution in wild isolates is mainly driven by the accumulation of single nucleotide polymorphisms. A common feature is the extensive loss of heterozygosity, which represents an essential source of inter-individual variation in this mainly asexual species. Most of the single nucleotide polymorphisms, including experimentally identified functional polymorphisms, are present at very low frequencies. The largest numbers of variants identified by genome-wide association are copy-number changes, which have a greater phenotypic effect than do single nucleotide polymorphisms. This resource will guide future population genomics and genotype–phenotype studies in this classic model system.
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              Chitin-induced dimerization activates a plant immune receptor.

              Pattern recognition receptors confer plant resistance to pathogen infection by recognizing the conserved pathogen-associated molecular patterns. The cell surface receptor chitin elicitor receptor kinase 1 of Arabidopsis (AtCERK1) directly binds chitin through its lysine motif (LysM)-containing ectodomain (AtCERK1-ECD) to activate immune responses. The crystal structure that we solved of an AtCERK1-ECD complexed with a chitin pentamer reveals that their interaction is primarily mediated by a LysM and three chitin residues. By acting as a bivalent ligand, a chitin octamer induces AtCERK1-ECD dimerization that is inhibited by shorter chitin oligomers. A mutation attenuating chitin-induced AtCERK1-ECD dimerization or formation of nonproductive AtCERK1 dimer by overexpression of AtCERK1-ECD compromises AtCERK1-mediated signaling in plant cells. Together, our data support the notion that chitin-induced AtCERK1 dimerization is critical for its activation.
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                Author and article information

                Contributors
                florian.freimoser@agroscope.admin.ch
                Journal
                World J Microbiol Biotechnol
                World J. Microbiol. Biotechnol
                World Journal of Microbiology & Biotechnology
                Springer Netherlands (Dordrecht )
                0959-3993
                1573-0972
                1 October 2019
                1 October 2019
                2019
                : 35
                : 10
                : 154
                Affiliations
                [1 ]ISNI 0000 0004 4681 910X, GRID grid.417771.3, Agroscope, Research Division Plant Protection, ; Müller-Thurgau-Strasse 29, 8820 Wädenswil, Switzerland
                [2 ]ISNI 0000 0001 2097 9138, GRID grid.11450.31, Dipartimento di Agraria, , Università degli Studi di Sassari, ; Viale Italia 39, 07100 Sassari, Italy
                [3 ]ISNI 0000 0001 2097 9138, GRID grid.11450.31, Istituto Nazionale di Biostrutture e Biosistemi and NRD - Nucleo di Ricerca sulla Desertificazione, , Università degli Studi di Sassari, ; Viale Italia 39, 07100 Sassari, Italy
                [4 ]ISNI 0000 0001 2168 2547, GRID grid.411489.1, Department of Health Sciences, , University “Magna Græcia” of Catanzaro, ; Viale Europa, 88100 Catanzaro, Italy
                Author information
                http://orcid.org/0000-0001-7607-3108
                http://orcid.org/0000-0002-2459-5833
                Article
                2728
                10.1007/s11274-019-2728-4
                6773674
                31576429
                5d1aa5df-a91c-4ade-8963-fb962377a63f
                © The Author(s) 2019

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

                History
                : 17 July 2019
                : 17 September 2019
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung;
                Award ID: 31003A_175665 / 1
                Award Recipient :
                Categories
                Review
                Custom metadata
                © Springer Nature B.V. 2019

                Biotechnology
                biological control,microbial antagonism,plant protection,plant pathogens,competition,enzyme secretion,toxin production,volatiles,mycoparasitism,resistance induction

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