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      Mediterranean vineyards and olive groves in Croatia harbour some rare and endemic invertebrates

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          Abstract

          The Mediterranean is characterised by high biodiversity and numerous endemic species. These species are not only present in natural habitats, but also inhabit areas under human influence, such as agricultural lands. In the biodiversity assessment of Mediterranean vineyards and olive orchards within Zadar County, in Croatia, we identified eight endemic species with Mediterranean distribution, six with a Balkan Peninsula distribution, four with Dinaric Alps distribution and three species rare and endangered in Europe. Alongside these species, we have recorded five new species for Croatian fauna, many of those identified by combining morphological characteristics and the DNA barcoding tool. Araneae and Coleoptera contributed the highest number of endemic species and groups with new record were the following: Coleoptera , Diptera and Araneae . Compared to other sites, an olive orchard with ecological pest management (EPM), surrounded by natural ecosystems, had the highest ratio of endemic and rare species. Our findings emphasise that agricultural lands in the Mediterranean can be habitats for endemic and rare species and that future biodiversity research of these habitats is highly important, to monitor potential biodiversity changes and motivate future species and ecosystem conservation.

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          bold: The Barcode of Life Data System (http://www.barcodinglife.org)

          The Barcode of Life Data System (bold) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. By assembling molecular, morphological and distributional data, it bridges a traditional bioinformatics chasm. bold is freely available to any researcher with interests in DNA barcoding. By providing specialized services, it aids the assembly of records that meet the standards needed to gain BARCODE designation in the global sequence databases. Because of its web-based delivery and flexible data security model, it is also well positioned to support projects that involve broad research alliances. This paper provides a brief introduction to the key elements of bold, discusses their functional capabilities, and concludes by examining computational resources and future prospects.
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            A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

            Because many animal species are undescribed, and because the identification of known species is often difficult, interim taxonomic nomenclature has often been used in biodiversity analysis. By assigning individuals to presumptive species, called operational taxonomic units (OTUs), these systems speed investigations into the patterning of biodiversity and enable studies that would otherwise be impossible. Although OTUs have conventionally been separated through their morphological divergence, DNA-based delineations are not only feasible, but have important advantages. OTU designation can be automated, data can be readily archived, and results can be easily compared among investigations. This study exploits these attributes to develop a persistent, species-level taxonomic registry for the animal kingdom based on the analysis of patterns of nucleotide variation in the barcode region of the cytochrome c oxidase I (COI) gene. It begins by examining the correspondence between groups of specimens identified to a species through prior taxonomic work and those inferred from the analysis of COI sequence variation using one new (RESL) and four established (ABGD, CROP, GMYC, jMOTU) algorithms. It subsequently describes the implementation, and structural attributes of the Barcode Index Number (BIN) system. Aside from a pragmatic role in biodiversity assessments, BINs will aid revisionary taxonomy by flagging possible cases of synonymy, and by collating geographical information, descriptive metadata, and images for specimens that are likely to belong to the same species, even if it is undescribed. More than 274,000 BIN web pages are now available, creating a biodiversity resource that is positioned for rapid growth.
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              Effects of neonicotinoids and fipronil on non-target invertebrates

              We assessed the state of knowledge regarding the effects of large-scale pollution with neonicotinoid insecticides and fipronil on non-target invertebrate species of terrestrial, freshwater and marine environments. A large section of the assessment is dedicated to the state of knowledge on sublethal effects on honeybees (Apis mellifera) because this important pollinator is the most studied non-target invertebrate species. Lepidoptera (butterflies and moths), Lumbricidae (earthworms), Apoidae sensu lato (bumblebees, solitary bees) and the section “other invertebrates” review available studies on the other terrestrial species. The sections on freshwater and marine species are rather short as little is known so far about the impact of neonicotinoid insecticides and fipronil on the diverse invertebrate fauna of these widely exposed habitats. For terrestrial and aquatic invertebrate species, the known effects of neonicotinoid pesticides and fipronil are described ranging from organismal toxicology and behavioural effects to population-level effects. For earthworms, freshwater and marine species, the relation of findings to regulatory risk assessment is described. Neonicotinoid insecticides exhibit very high toxicity to a wide range of invertebrates, particularly insects, and field-realistic exposure is likely to result in both lethal and a broad range of important sublethal impacts. There is a major knowledge gap regarding impacts on the grand majority of invertebrates, many of which perform essential roles enabling healthy ecosystem functioning. The data on the few non-target species on which field tests have been performed are limited by major flaws in the outdated test protocols. Despite large knowledge gaps and uncertainties, enough knowledge exists to conclude that existing levels of pollution with neonicotinoids and fipronil resulting from presently authorized uses frequently exceed the lowest observed adverse effect concentrations and are thus likely to have large-scale and wide ranging negative biological and ecological impacts on a wide range of non-target invertebrates in terrestrial, aquatic, marine and benthic habitats.
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                Author and article information

                Contributors
                Role: Writing - original draftRole: Data curationRole: Formal analysisRole: MethodologyRole: Visualization
                Role: Data curation
                Role: Writing - review and editingRole: Data curationRole: Visualization
                Role: Data curation
                Journal
                Biodivers Data J
                Biodivers Data J
                1
                urn:lsid:arphahub.com:pub:F9B2E808-C883-5F47-B276-6D62129E4FF4
                urn:lsid:zoobank.org:pub:245B00E9-BFE5-4B4F-B76E-15C30BA74C02
                Biodiversity Data Journal
                Pensoft Publishers
                1314-2836
                1314-2828
                2023
                20 April 2023
                : 11
                : e100963
                Affiliations
                [1 ] Department of Biology, Faculty of Science, University of Zagreb, Rooseveltov trg 6, Zagreb, Croatia Department of Biology, Faculty of Science, University of Zagreb, Rooseveltov trg 6 Zagreb Croatia
                [2 ] Department for Ecology, Agronomy and Aquaculture, University of Zadar, Trg kneza Višeslava, Zadar, Croatia Department for Ecology, Agronomy and Aquaculture, University of Zadar, Trg kneza Višeslava Zadar Croatia
                [3 ] Croatian Natural History Museum, Demetrova 1, Zagreb, Croatia Croatian Natural History Museum, Demetrova 1 Zagreb Croatia
                [4 ] Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlarska 2, Brno, Czech Republic Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlarska 2 Brno Czech Republic
                [5 ] Varaždin City Museum, Šetalište Josipa Jurja Strossmayera 3, Varaždin, Croatia Varaždin City Museum, Šetalište Josipa Jurja Strossmayera 3 Varaždin Croatia
                Author notes
                Corresponding authors: Lara Ivanković Tatalović ( lara.ivankovic@ 123456biol.pmf.hr ), Lucija Šerić Jelaska ( slucija@ 123456biol.pmf.hr ).

                Academic editor: Dimitris Poursanidis

                Article
                100963 21339
                10.3897/BDJ.11.e100963
                10850877
                38333190
                61dc704e-642c-40be-a37e-acb6071b46ae
                Barbara Anđelić Dmitrović, Lara Ivanković Tatalović, Tomislav Kos, Petar Crnčan, Domagoj Gajski, Mišel Jelić, Lucija Šerić Jelaska

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 24 January 2023
                : 05 March 2023
                Page count
                Figures: 5, Tables: 4, References: 109
                Categories
                Research Article

                araneae,balkan penninsula,carabids,endemics,gastropoda,mediterranean,endangered species

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