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      Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts.

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          Abstract

          Comparative genomics provides insights into the diversification of bacterial species. Bacterial speciation usually takes place with lasting homologous recombination, which not only acts as a cohering force between diverging lineages but brings advantageous alleles favored by natural selection, and results in ecologically distinct species, e.g., frequent host shift in Xanthomonas pathogenic to various plants.

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          Author and article information

          Journal
          Journal ID (iso-abbrev): BMC Genomics
          Title: BMC genomics
          Publisher: Springer Science and Business Media LLC
          ISSN (Electronic): 1471-2164
          ISSN (Print): 1471-2164
          Publication date (Electronic): Mar 15 2015
          Volume: 16
          Issue: 1
          Affiliations
          [1 ] Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan. clhuang65535@gmail.com.
          [2 ] Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan. pph941027@yahoo.com.tw.
          [3 ] Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan. haojen@mail.ncku.edu.tw.
          [4 ] Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan. hmsung@mail.ncku.edu.tw.
          [5 ] Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan. liawh@mail.ncku.edu.tw.
          [6 ] Institute of Biotechnology, National Cheng Kung University, Tainan, 701, Taiwan. cohen@mail.ncku.edu.tw.
          [7 ] Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, 202, Taiwan. d98570003@mail.ntou.edu.tw.
          [8 ] Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan. h2o41040272@gmail.com.
          [9 ] National Institute of Genetics, Mishima, Shizuoka, 411-8540, Yata, Japan. nosada@nig.ac.jp.
          [10 ] Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan. tgojobor@nig.ac.jp.
          [11 ] National Institute of Genetics, Mishima, Shizuoka, 411-8540, Yata, Japan. tgojobor@nig.ac.jp.
          [12 ] Computational Bioscience Research Center, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. tgojobor@nig.ac.jp.
          [13 ] Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, 202, Taiwan. twp@mail.ntou.edu.tw.
          [14 ] Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan. wytchen@gmail.com.
          [15 ] Department of Engineering Science and Supercomputing Research Center, National Cheng Kung University, Tainan, 701, Taiwan. chchwang@mail.ncku.edu.tw.
          [16 ] Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan. tychiang@mail.ncku.edu.tw.
          Article
          Publisher Item ID: 10.1186/s12864-015-1369-8
          DOI: 10.1186/s12864-015-1369-8
          PMC ID: 4372319
          PubMed ID: 25879893
          SO-VID: 6426bc97-ed52-4a40-9a4d-b1956b964f20
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