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      Short stature and hypoparathyroidism in a child with Kenny-Caffey syndrome type 2 due to a novel mutation in FAM111A gene

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          Abstract

          Background

          Hypoparathyroidism in children is a heterogeneous group with diverse genetic etiologies. To aid clinicians in the investigation and management of children with hypoparathyroidism, we describe the phenotype of a 6-year-old child with hypoparathyroidism and short stature diagnosed with Kenny-Caffey syndrome (KCS) Type 2 and the subsequent response to growth hormone (GH) treatment.

          Case presentation

          The proband presented in the neonatal period with hypocalcemic seizures secondary to hypoparathyroidism. Her phenotype included small hands and feet, hypoplastic and dystrophic nails, hypoplastic mid-face and macrocrania. Postnatal growth was delayed but neurodevelopment was normal. A skeletal survey at 2 years of age was suggestive of KCS Type 2 and genetic testing revealed a novel de novo heterozygous mutation c.1622C > A (p.Ser541Tyr) in FAM111A. At 3 years and 2 months, her height was 80cms (SDS −3.86). She had normal overnight GH levels. GH therapy was commenced at a dose of 4.9 mg/m 2/week for her short stature and low height velocity of 5cms/year. At the end of the first and second years of GH treatment, height velocity was 6.5cms/year and 7.2cms/year, respectively with maximal dose of 7.24 mg/m 2/week.

          Conclusion

          This case highlights the phenotype and the limited response to GH in a child with genetically proven KCS type 2. Long-term registries monitoring growth outcomes following GH therapy in patients with rare genetic conditions may help guide clinical decisions regarding the use and doses of GH in these conditions.

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          Most cited references11

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          Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components.

          To maintain genome function and stability, DNA sequence and its organization into chromatin must be duplicated during cell division. Understanding how entire chromosomes are copied remains a major challenge. Here, we use nascent chromatin capture (NCC) to profile chromatin proteome dynamics during replication in human cells. NCC relies on biotin-dUTP labelling of replicating DNA, affinity purification and quantitative proteomics. Comparing nascent chromatin with mature post-replicative chromatin, we provide association dynamics for 3,995 proteins. The replication machinery and 485 chromatin factors such as CAF-1, DNMT1 and SUV39h1 are enriched in nascent chromatin, whereas 170 factors including histone H1, DNMT3, MBD1-3 and PRC1 show delayed association. This correlates with H4K5K12diAc removal and H3K9me1 accumulation, whereas H3K27me3 and H3K9me3 remain unchanged. Finally, we combine NCC enrichment with experimentally derived chromatin probabilities to predict a function in nascent chromatin for 93 uncharacterized proteins, and identify FAM111A as a replication factor required for PCNA loading. Together, this provides an extensive resource to understand genome and epigenome maintenance.
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            Short and tall stature: a new paradigm emerges.

            In the past, the growth hormone (GH)-insulin-like growth factor 1 (IGF-1) axis was often considered to be the main system that regulated childhood growth and, therefore, determined short stature and tall stature. However, findings have now revealed that the GH-IGF-1 axis is just one of many regulatory systems that control chondrogenesis in the growth plate, which is the biological process that drives height gain. Consequently, normal growth in children depends not only on GH and IGF-1 but also on multiple hormones, paracrine factors, extracellular matrix molecules and intracellular proteins that regulate the activity of growth plate chondrocytes. Mutations in the genes that encode many of these local proteins cause short stature or tall stature. Similarly, genome-wide association studies have revealed that the normal variation in height seems to be largely due to genes outside the GH-IGF-1 axis that affect growth at the growth plate through a wide variety of mechanisms. These findings point to a new conceptual framework for understanding short and tall stature that is centred not on two particular hormones but rather on the growth plate, which is the structure responsible for height gain.
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              Whole Exome Sequencing to Identify Genetic Causes of Short Stature

              Background/Aims: Short stature is a common reason for presentation to pediatric endocrinology clinics. However, for most patients, no cause for the short stature can be identified. As genetics plays a strong role in height, we sought to identify known and novel genetic causes of short stature. Methods: We recruited 14 children with severe short stature of unknown etiology. We conducted whole exome sequencing of the patients and their family members. We used an analysis pipeline to identify rare non-synonymous genetic variants that cause the short stature. Results: We identified a genetic cause of short stature in 5 of the 14 patients. This included cases of floating-harbor syndrome, Kenny-Caffey syndrome, the progeroid form of Ehlers-Danlos syndrome, as well as 2 cases of the 3-M syndrome. For the remaining patients, we have generated lists of candidate variants. Conclusions: Whole exome sequencing can help identify genetic causes of short stature in the context of defined genetic syndromes, but may be less effective in identifying novel genetic causes of short stature in individual families. Utilized in the clinic, whole exome sequencing can provide clinically relevant diagnoses for these patients. Rare syndromic causes of short stature may be underrecognized and underdiagnosed in pediatric endocrinology clinics.
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                Author and article information

                Contributors
                Mary.Abraham@health.wa.gov.au
                LiD2@email.chop.edu
                dave.tang@telethonkids.org.au
                Susan.OConnell@hse.ie
                Fiona.Mckenzie@health.wa.gov.au
                EEmun.Lim@health.wa.gov.au
                hakonarson@email.chop.edu
                LEVINEM@email.chop.edu
                Catherine.Choong@health.wa.gov.au
                Journal
                Int J Pediatr Endocrinol
                Int J Pediatr Endocrinol
                International Journal of Pediatric Endocrinology
                BioMed Central (London )
                1687-9848
                1687-9856
                25 January 2017
                25 January 2017
                2017
                : 2017
                : 1
                Affiliations
                [1 ]ISNI 0000 0004 0625 8600, GRID grid.410667.2, Department of Endocrinology, , Princess Margaret Hospital, ; Perth, Australia
                [2 ]ISNI 0000 0004 1936 7910, GRID grid.1012.2, School of Paediatrics and Child Health, , The University of Western Australia, ; Perth, Australia
                [3 ]ISNI 0000 0001 0680 8770, GRID grid.239552.a, Center for Applied Genomics, Abramson Research Center, , The Children’s Hospital of Philadelphia, ; Philadelphia, USA
                [4 ]ISNI 0000 0000 8828 1230, GRID grid.414659.b, , Telethon Kids Institute, ; Perth, Australia
                [5 ]Genetic Services of Western Australia, Princess Margaret Hospital and King Edward Memorial Hospital, Perth, Australia
                [6 ]ISNI 0000 0004 1936 7910, GRID grid.1012.2, School of Pathology and Laboratory Medicine, , The University of Western Australia, ; Perth, Australia
                [7 ]ISNI 0000 0004 0589 6117, GRID grid.2824.c, Department of Biochemistry, , PathWest Laboratory Medicine, ; Perth, Australia
                [8 ]ISNI 0000 0004 0437 5942, GRID grid.3521.5, , Sir Charles Gairdner Hospital, ; Nedlands, Perth, Australia
                [9 ]ISNI 0000 0001 0680 8770, GRID grid.239552.a, Division of Human Genetics and Department of Pediatrics, , The Children’s Hospital of Philadelphia and The Perelman School of Medicine, ; Philadelphia, USA
                [10 ]ISNI 0000 0001 0680 8770, GRID grid.239552.a, Division of Pulmonary Medicine, , The Children’s Hospital of Philadelphia, ; Philadelphia, USA
                [11 ]ISNI 0000 0001 0680 8770, GRID grid.239552.a, Division of Endocrinology and Diabetes, , The Children’s Hospital of Philadelphia, ; Philadelphia, USA
                [12 ]ISNI 0000 0001 0680 8770, GRID grid.239552.a, Center for Bone Health, , The Children’s Hospital of Philadelphia, ; Philadelphia, USA
                [13 ]ISNI 0000 0004 0625 8600, GRID grid.410667.2, Department of Endocrinology and Diabetes, , Princess Margaret Hospital, ; Perth, Australia
                Article
                41
                10.1186/s13633-016-0041-7
                5264330
                28138333
                695321d2-9674-4055-9757-47f4a159429c
                © The Author(s). 2017

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 15 November 2016
                : 23 December 2016
                Categories
                Case Report
                Custom metadata
                © The Author(s) 2017

                Pediatrics
                kenny-caffey syndrome type 2,fam111a gene,growth hormone,hypoparathyroidism,short stature,genetics

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