Contributors
Jaafar Alomairi: Role: Writing – original draft
Anne M. Molitor: Role: MethodologyRole: Validation
Nori Sadouni: Role: Methodology
Saadat Hussain: Role: Methodology
Magali Torres: Role: Methodology
Wiam Saadi: Role: Methodology
Lan T. M. Dao: Role: Methodology
Guillaume Charbonnier: Role: Methodology
David Santiago-Algarra: Role: Methodology
Jean Christophe Andrau: Role: Supervision
Denis Puthier: Role: Methodology
Tom Sexton: Role: Methodology
Salvatore Spicuglia:
ORCID: http://orcid.org/0000-0002-8101-7108
Role: SupervisionRole: Writing – original draftRole: Writing – review & editing
Charalampos G Spilianakis: Role: Editor
Journal
Journal ID (nlm-ta): PLoS One
Journal ID (iso-abbrev): PLoS ONE
Journal ID (publisher-id): plos
Journal ID (pmc): plosone
Title:
PLoS ONE
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Electronic):
1932-6203
Publication date
(Electronic):
26
May
2020
Publication date Collection: 2020
Volume: 15
Issue: 5
Electronic Location Identifier: e0233191
Affiliations
[1
]
Aix-Marseille University, Inserm, TAGC, UMR1090, Marseille, France
[2
]
Equipe Labélisée Ligue Contre le Cancer, Marseille, France
[3
]
Institute of Genetics and Molecular and Cellular Biology (IGBMC), Illkirch, France
[4
]
CNRS UMR7104, Illkirch, France
[5
]
INSERM U1258, Illkirch, France
[6
]
University of Strasbourg, Illkirch, France
[7
]
Institut de Génétique Moléculaire de Montpellier, Univ Montpellier, CNRS, Montpellier,
France
University of Crete & IMBB-FORTH, GREECE
Author notes
Competing Interests: The authors have declared that no competing interests exist
[¤]
Current address: Vinmec Research Institute of Stem cell and Gene technology (VRISG),
Hà Nội, Vietnam
Author information
Article
Publisher ID:
PONE-D-20-02571
DOI: 10.1371/journal.pone.0233191
PMC ID: 7250416
PubMed ID: 32453736
SO-VID: 6cb54d60-e63f-4164-8e2d-6d38865f03d9
Copyright © © 2020 Alomairi et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
History
Date
received
: 28
January
2020
Date
accepted
: 29
April
2020
Page count
Figures: 4,
Tables: 0,
Pages: 16
Funding
Funded by: funder-id http://dx.doi.org/10.13039/100007586, Aix-Marseille Université;
Award Recipient
:
ORCID: http://orcid.org/0000-0002-8101-7108
Salvatore Spicuglia
Funded by: funder-id http://dx.doi.org/10.13039/501100004099, Ligue Contre le Cancer;
Award Recipient
:
ORCID: http://orcid.org/0000-0002-8101-7108
Salvatore Spicuglia
Funded by: funder-id http://dx.doi.org/10.13039/501100006331, Canceropôle PACA;
Award Recipient
:
ORCID: http://orcid.org/0000-0002-8101-7108
Salvatore Spicuglia
Funded by: funder-id http://dx.doi.org/10.13039/501100001665, Agence Nationale de la Recherche;
Award ID: ANR-11-IDEX-0001-02
Award Recipient
:
ORCID: http://orcid.org/0000-0002-8101-7108
Salvatore Spicuglia
Funded by: funder-id http://dx.doi.org/10.13039/501100001665, Agence Nationale de la Recherche;
Award ID: ANR-10-LABX-0030-INRT
Award Recipient
:
Tom Sexton
Funded by: funder-id http://dx.doi.org/10.13039/100010663, H2020 European Research Council;
Award Recipient
:
ORCID: http://orcid.org/0000-0002-8101-7108
Salvatore Spicuglia
Funded by: funder-id http://dx.doi.org/10.13039/501100001665, Agence Nationale de la Recherche;
Award ID: ANR-10-IDEX-0002-02
Award Recipient
:
Tom Sexton
We thank the Transcriptomics and Genomics Marseille-Luminy (TGML) platform for sequencing
the ChIP-seq samples and the Marseille-Luminy cell biology platform for the management
of cell culture. Sequencing of 4C samples was performed by the IGBMC GenomEast platform.
TGML and GenomEast platforms are member of the France Genomique consortium (ANR-10-INBS-0009).
Work in the laboratory of S.S. was supported by recurrent funding from INSERM and
Aix-Marseille University and specific grants from the Ligue contre le Cancer (Equipe
Labellisée LIGUE 2018), the Agence Nationale pour la Recherche, ANR (ANR-17-CE12-0035;
ANR-18-CE12-0019), Cancéropôle PACA, Institut National contre le Cancer (PLBIO018-031
INCA_12619), the Excellence Initiative of Aix-Marseille University - A*Midex, a French
“Investissements d’Avenir” programme (ANR-11-IDEX-0001-02). Work in the lab of TS
is supported by funds from the European Research Council (ERC) under the European
Union’s Horizon 2020 research and innovation program (Starting Grant 678624 - CHROMTOPOLOGY),
the ATIP-Avenir program, and the grant ANR-10-LABX-0030-INRT, a French State fund
managed by the Agence Nationale de la Recherche under the frame program Investissements
d’Avenir ANR-10-IDEX-0002-02. AMM is supported by funds from IDEX (University of Strasbourg)
and the Institut National du Cancer. The funders had no role in study design, data
collection and analysis, decision to publish, or preparation of the manuscript.
Categories
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Cellular Types
Subject:
Animal Cells
Subject:
Stem Cells
Subject:
Hematopoietic Progenitor Cells
Subject:
Thymocytes
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genetic Loci
Subject:
Biology and life sciences
Subject:
Biochemistry
Subject:
Proteins
Subject:
DNA-binding proteins
Subject:
Transcription Factors
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Gene Expression
Subject:
Gene Regulation
Subject:
Transcription Factors
Subject:
Biology and Life Sciences
Subject:
Biochemistry
Subject:
Proteins
Subject:
Regulatory Proteins
Subject:
Transcription Factors
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Artificial Gene Amplification and Extension
Subject:
Polymerase Chain Reaction
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Artificial Gene Amplification and Extension
Subject:
Polymerase Chain Reaction
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Signal Transduction
Subject:
Cell Signaling
Subject:
Genomic Signal Processing
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Gene Expression
Subject:
Gene Regulation
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Chromosome Biology
Subject:
Chromatin
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Epigenetics
Subject:
Chromatin
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Gene Expression
Subject:
Chromatin
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Gene Expression
Subject:
Gene Regulation
Subject:
Enhancer Elements
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