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      Endocytic proteins with prion-like domains form viscoelastic condensates that enable membrane remodeling

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          Significance

          The uptake of molecules into cells, known as endocytosis, requires membrane invagination and the formation of vesicles. A version of endocytosis that is independent of actin polymerization is aided by the assembly of membraneless biomolecular condensates at the site of membrane invagination. Here, we show that endocytic condensates are viscoelastic bodies that concentrate key proteins with prion-like domains to enable membrane remodeling. A distinct molecular grammar, namely the preference for glutamine versus asparagine residues, underlies the cohesive interactions that give rise to endocytic condensates. We incorporate material properties inferred using active rheology into a mechanical model to explain how cohesive interactions within condensates and interfacial tensions among condensates, membranes, and the cytosol can drive membrane invagination to initiate endocyosis.

          Abstract

          Membrane invagination and vesicle formation are key steps in endocytosis and cellular trafficking. Here, we show that endocytic coat proteins with prion-like domains (PLDs) form hemispherical puncta in the budding yeast, Saccharomyces cerevisiae. These puncta have the hallmarks of biomolecular condensates and organize proteins at the membrane for actin-dependent endocytosis. They also enable membrane remodeling to drive actin-independent endocytosis. The puncta, which we refer to as endocytic condensates, form and dissolve reversibly in response to changes in temperature and solution conditions. We find that endocytic condensates are organized around dynamic protein–protein interaction networks, which involve interactions among PLDs with high glutamine contents. The endocytic coat protein Sla1 is at the hub of the protein–protein interaction network. Using active rheology, we inferred the material properties of endocytic condensates. These experiments show that endocytic condensates are akin to viscoelastic materials. We use these characterizations to estimate the interfacial tension between endocytic condensates and their surroundings. We then adapt the physics of contact mechanics, specifically modifications of Hertz theory, to develop a quantitative framework for describing how interfacial tensions among condensates, the membrane, and the cytosol can deform the plasma membrane to enable actin-independent endocytosis.

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          Most cited references79

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          Biomolecular condensates: organizers of cellular biochemistry

          In addition to membrane-bound organelles, eukaryotic cells feature various membraneless compartments, including the centrosome, the nucleolus and various granules. Many of these compartments form through liquid–liquid phase separation, and the principles, mechanisms and regulation of their assembly as well as their cellular functions are now beginning to emerge.
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            A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

            Many proteins contain disordered regions of low-sequence complexity, which cause aging-associated diseases because they are prone to aggregate. Here, we study FUS, a prion-like protein containing intrinsically disordered domains associated with the neurodegenerative disease ALS. We show that, in cells, FUS forms liquid compartments at sites of DNA damage and in the cytoplasm upon stress. We confirm this by reconstituting liquid FUS compartments in vitro. Using an in vitro "aging" experiment, we demonstrate that liquid droplets of FUS protein convert with time from a liquid to an aggregated state, and this conversion is accelerated by patient-derived mutations. We conclude that the physiological role of FUS requires forming dynamic liquid-like compartments. We propose that liquid-like compartments carry the trade-off between functionality and risk of aggregation and that aberrant phase transitions within liquid-like compartments lie at the heart of ALS and, presumably, other age-related diseases.
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              Effect of contact deformations on the adhesion of particles

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                Author and article information

                Journal
                Proc Natl Acad Sci U S A
                Proc Natl Acad Sci U S A
                pnas
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                9 December 2021
                14 December 2021
                9 December 2021
                : 118
                : 50
                : e2113789118
                Affiliations
                [1] aDépartement de Biochimie, Université de Montréal , Montréal, QC H3C 3J7, Canada;
                [2] bDepartment of Bioengineering, McGill University , Montreal, QC H3A 0C3, Canada;
                [3] cDepartment of Chemistry, University of Washington , Seattle, Seattle, WA 98195-1700;
                [4] dErnest Rutherford Physics Building, McGill University , Montreal, QC H3A 2T8, Canada;
                [5] eDepartment of Biomedical Engineering and Center for Science and Engineering of Living Systems, Washington University in St. Louis , St. Louis, MO 63130;
                [6] fCentre Robert-Cedergren, Bio-Informatique et Génomique, Université de Montréal , Montréal, QC H3C 3J7, Canada
                Author notes
                1To whom correspondence may be addressed. Email: pappu@ 123456wustl.edu or stephen.michnick@ 123456umontreal.ca .

                Edited by Anthony Hyman, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany; received August 23, 2021; accepted October 18, 2021.

                Author contributions: L.-P.B.-S., S.K., H.K.H., A.G.H., A.J.E., R.V.P., and S.W.M. designed research; L.-P.B.-S., S.K., H.K.H., C.L.A.C., and C.E.C. performed research; S.L.K., P.F., A.G.H., and A.J.E. contributed new reagents/analytic tools; L.-P.B.-S., S.K., H.K.H., S.L.K., A.G.H., A.J.E., R.V.P., and S.W.M. analyzed data; and L.-P.B.-S., S.K., H.K.H., S.L.K., P.F., A.G.H., A.J.E., R.V.P., and S.W.M. wrote the paper.

                Author information
                https://orcid.org/0000-0001-7675-1415
                https://orcid.org/0000-0001-5919-0185
                https://orcid.org/0000-0002-2223-839X
                https://orcid.org/0000-0003-3635-1577
                https://orcid.org/0000-0003-3030-979X
                https://orcid.org/0000-0003-2568-1378
                Article
                202113789
                10.1073/pnas.2113789118
                8685726
                34887356
                714a2b55-6e92-4e00-88ac-a744af7ee50b
                Copyright © 2021 the Author(s). Published by PNAS.

                This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

                History
                : 18 October 2021
                Page count
                Pages: 12
                Funding
                Funded by: Gouvernement du Canada | CIHR | Institute of Genetics (IG) 501100000030
                Award ID: MOP-GMX-152556
                Award Recipient : Allen J Ehrlicher Award Recipient : Stephen W Michnick
                Funded by: HHS | NIH | National Institute of General Medical Sciences (NIGMS) 100000057
                Award ID: R01NS056114
                Award Recipient : Sarah L. Keller Award Recipient : Rohit V Pappu
                Funded by: Fonds de Recherche du Québec - Nature et Technologies (FRQNT) 501100003151
                Award ID: 256956
                Award Recipient : Stephen W Michnick
                Funded by: NSF | Directorate for Computer and Information Science and Engineering (CISE) 100000083
                Award ID: MCB-1614766
                Award Recipient : Rohit V Pappu
                Funded by: Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (NSERC) 501100000038
                Award ID: RGPIN/05843-2014
                Award Recipient : Allen J Ehrlicher
                Funded by: Gouvernement du Canada | CIHR | Institute of Genetics (IG) 501100000030
                Award ID: 143327
                Award Recipient : Allen J Ehrlicher Award Recipient : Stephen W Michnick
                Funded by: Canada Foundation for Innovation (CFI) 501100000196
                Award ID: 32749
                Award Recipient : Allen J Ehrlicher
                Funded by: Human Frontier Science Program (HFSP) 100004412
                Award ID: RGP0034/2017
                Award Recipient : Stephen W Michnick
                Funded by: HHS | NIH | National Institute of General Medical Sciences (NIGMS) 100000057
                Award ID: T32GM008268
                Award Recipient : Sarah L. Keller Award Recipient : Rohit V Pappu
                Funded by: NSF | BIO | Division of Molecular and Cellular Biosciences (MCB) 100000152
                Award ID: MCB-1402059
                Award Recipient : Sarah L. Keller
                Categories
                408
                Biological Sciences
                Biophysics and Computational Biology

                endocytosis,biomolecular condensates,viscoelasticity,protein–protein interactions

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