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      Combining Chemical Information From Grass Pollen in Multimodal Characterization

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          Abstract

          The analysis of pollen chemical composition is important to many fields, including agriculture, plant physiology, ecology, allergology, and climate studies. Here, the potential of a combination of different spectroscopic and spectrometric methods regarding the characterization of small biochemical differences between pollen samples was evaluated using multivariate statistical approaches. Pollen samples, collected from three populations of the grass Poa alpina, were analyzed using Fourier-transform infrared (FTIR) spectroscopy, Raman spectroscopy, surface enhanced Raman scattering (SERS), and matrix assisted laser desorption/ionization mass spectrometry (MALDI-TOF MS). The variation in the sample set can be described in a hierarchical framework comprising three populations of the same grass species and four different growth conditions of the parent plants for each of the populations. Therefore, the data set can work here as a model system to evaluate the classification and characterization ability of the different spectroscopic and spectrometric methods. ANOVA Simultaneous Component Analysis (ASCA) was applied to achieve a separation of different sources of variance in the complex sample set. Since the chosen methods and sample preparations probe different parts and/or molecular constituents of the pollen grains, complementary information about the chemical composition of the pollen can be obtained. By using consensus principal component analysis (CPCA), data from the different methods are linked together. This enables an investigation of the underlying global information, since complementary chemical data are combined. The molecular information from four spectroscopies was combined with phenotypical information gathered from the parent plants, thereby helping to potentially link pollen chemistry to other biotic and abiotic parameters.

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          Adsorption and surface-enhanced Raman of dyes on silver and gold sols

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            Reference database of Raman spectra of biological molecules

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              ANOVA-simultaneous component analysis (ASCA): a new tool for analyzing designed metabolomics data.

              Datasets resulting from metabolomics or metabolic profiling experiments are becoming increasingly complex. Such datasets may contain underlying factors, such as time (time-resolved or longitudinal measurements), doses or combinations thereof. Currently used biostatistics methods do not take the structure of such complex datasets into account. However, incorporating this structure into the data analysis is important for understanding the biological information in these datasets. We describe ASCA, a new method that can deal with complex multivariate datasets containing an underlying experimental design, such as metabolomics datasets. It is a direct generalization of analysis of variance (ANOVA) for univariate data to the multivariate case. The method allows for easy interpretation of the variation induced by the different factors of the design. The method is illustrated with a dataset from a metabolomics experiment with time and dose factors.
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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                31 January 2020
                2019
                : 10
                : 1788
                Affiliations
                [1] 1 Department of Chemistry, Humboldt-Universität zu Berlin , Berlin, Germany
                [2] 2 BAM Federal Institute for Materials Research and Testing , Berlin, Germany
                [3] 3 Faculty of Science and Technology, Norwegian University of Life Sciences , Ås, Norway
                [4] 4 Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences , Ås, Norway
                [5] 5 Faculty of Biosciences, Norwegian University of Life Sciences , Ås, Norway
                [6] 6 Nofima AS , Ås, Norway
                Author notes

                Edited by: Lisbeth Garbrecht Thygesen, University of Copenhagen, Denmark

                Reviewed by: Wesley Toby Fraser, Oxford Brookes University, United Kingdom; Åsmund Rinnan, University of Copenhagen, Denmark; Anna De Juan, University of Barcelona, Spain

                *Correspondence: Janina Kneipp, janina.kneipp@ 123456chemie.hu-berlin.de ,

                This article was submitted to Technical Advances in Plant Science, a section of the journal Frontiers in Plant Science

                Article
                10.3389/fpls.2019.01788
                7005252
                73f5e69c-866f-4e69-b99e-cbcf76af20d1
                Copyright © 2020 Diehn, Zimmermann, Tafintseva, Seifert, Bağcıoğlu, Ohlson, Weidner, Fjellheim, Kohler and Kneipp

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 30 August 2019
                : 20 December 2019
                Page count
                Figures: 9, Tables: 2, Equations: 0, References: 54, Pages: 18, Words: 11015
                Funding
                Funded by: European Commission 10.13039/501100000780
                Award ID: FP7-PEOPLE-2012-IEF project No. 328289
                Funded by: FP7 Ideas: European Research Council 10.13039/100011199
                Categories
                Plant Science
                Original Research

                Plant science & Botany
                pollen,consensus principal component analysis,anova simultaneous component analysis,fourier-transform infrared spectroscopy,matrix assisted laser desorption/ionization mass spectrometry,surface-enhanced raman scattering,raman spectroscopy,poa alpina

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