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      Verification of cuproptosis-related diagnostic model associated with immune infiltration in rheumatoid arthritis

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          Abstract

          Background

          Rheumatoid arthritis (RA) is a chronic autoimmune disease closely related to inflammation. Cuproptosis is a newly discovered unique type of cell death, and it has been found that it may play an essential role in the occurrence and development of RA. Therefore, we intend to explore the potential association between cuproptosis-related genes (CRGs) and RA to provide a new biomarker for the treatment and prognosis of RA.

          Methods

          Download GSE93777 datasets from the GEO database. Variance analysis was performed on the CRGs that had been reported. Then, the random forest (RF) model and nomogram of differentially expressed CRGs were constructed, and the ROC curve was used to evaluate the accuracy of the diagnostic model. Next, RA patients were subtyped by consensus clustering, and immune infiltration was analyzed in each subgroup to confirm the correlation between CRGs and abundance of immune cells. The expression levels of CRGs were verified by qRT-PCR.

          Results

          Eight differentially expressed CRGs (DLST, DLD, PDHB, PDHA1, ATP7A, CDKN2A, LIAS, DLAT) were screened out by differential analysis to construct an RF model. The ROC curve proved that this model had good diagnostic accuracy. Based on the above eight significant CRGs, a nomogram was built to predict effective and high-precision results. The consensus clustering method identified two CRG patterns. Most of the immune cells were enriched in cluster A, indicating that cluster A may be related to the development of RA. Finally, qRT-PCR verified the expression of eight key genes, further confirming our findings.

          Conclusion

          The diagnosis model of RA based on the above eight CRGs has excellent diagnostic potential. Based on these, patients can be divided into two different molecular subtypes; it is expected to develop a new treatment strategy for RA.

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          Most cited references24

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          Rheumatoid Arthritis

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            Macrophage heterogeneity in the context of rheumatoid arthritis.

            Macrophages are very important in the pathogenesis of rheumatoid arthritis (RA). The increase in the number of sublining macrophages in the synovium is an early hallmark of active rheumatic disease, and high numbers of macrophages are a prominent feature of inflammatory lesions. The degree of synovial macrophage infiltration correlates with the degree of joint erosion, and depletion of these macrophages from inflamed tissue has a profound therapeutic benefit. Research has now uncovered an unexpectedly high level of heterogeneity in macrophage origin and function, and has emphasized the role of environmental factors in their functional specialization. Although the heterogeneous populations of macrophages in RA have not been fully characterized, preliminary results in mouse models of arthritis have contributed to our understanding of the phenotype and ontogeny of synovial macrophages, and to deciphering the properties of monocyte-derived infiltrating and tissue-resident macrophages. Elucidating the molecular mechanisms that drive polarization of macrophages towards proinflammatory or anti-inflammatory phenotypes could lead to identification of signalling pathways that inform future therapeutic strategies.
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              Neutrophil extracellular traps (NETs) in autoimmune diseases: A comprehensive review.

              Neutrophil extracellular traps (NETs) are fibrous networks which protrude from the membranes of activated neutrophils. NETs are found in a variety of conditions such as infection, malignancy, atherosclerosis, and autoimmune diseases including rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), anti-neutrophil cytoplasmic antibodies (ANCA)-associated vasculitis (AAV), psoriasis, and gout. Studies suggest that an imbalance between "NETosis," which is a process by which NETs are formed, and NET degradation may be associated with autoimmune diseases. Neutrophils, interleukin-8, ANCA and other inflammatory molecules are considered to play a key role in NET formation. Prolonged exposure to NETs-related cascades is associated with autoimmunity and increases the chance of systemic organ damage. In this review, we discuss the roles of various inflammatory molecules in relation to NETs. We also describe the role of NETs in the pathogenesis of autoimmune diseases and discuss the possibility of using targeted therapies directed to NETs and associated molecules to treat autoimmune diseases.
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                Author and article information

                Contributors
                Journal
                Front Endocrinol (Lausanne)
                Front Endocrinol (Lausanne)
                Front. Endocrinol.
                Frontiers in Endocrinology
                Frontiers Media S.A.
                1664-2392
                20 July 2023
                2023
                : 14
                : 1204926
                Affiliations
                [1] 1 Department of Bone and Joint Surgery, Guangxi Medical University First Affiliated Hospital , Nanning, China
                [2] 2 Department of Rehabilitation, The Affiliated Hospital of Youjiang Medical University for Nationalities , Baise, China
                Author notes

                Edited by: Zhenyu Song, Shanghai Jiao Tong University, China

                Reviewed by: Jae-Hyuck Shim, University of Massachusetts Medical School, United States; Lei Xiong, Massachusetts Institute of Technology, United States

                *Correspondence: Zhandong Bo, drrbozhandong@ 123456126.com

                †These authors have contributed equally to this work

                Article
                10.3389/fendo.2023.1204926
                10399571
                37547319
                7a98a542-db8b-4037-86d2-19061040247d
                Copyright © 2023 Jiang, Liu, Lu, Qiu, Zou, Zhang, Chen, Jike, Xie, Dai and Bo

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 13 April 2023
                : 15 June 2023
                Page count
                Figures: 11, Tables: 1, Equations: 0, References: 24, Pages: 14, Words: 4500
                Categories
                Endocrinology
                Original Research
                Custom metadata
                Cellular Endocrinology

                Endocrinology & Diabetes
                rheumatoid arthritis,cuproptosis,diagnostic model,immune infiltration,diagnostics

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