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      Averting an Outbreak of SARS-CoV-2 in a University Residence Hall through Wastewater Surveillance

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          ABSTRACT

          A wastewater surveillance program targeting a university residence hall was implemented during the spring semester 2021 as a proactive measure to avoid an outbreak of COVID-19 on campus. Over a period of 7 weeks from early February through late March 2021, wastewater originating from the residence hall was collected as grab samples 3 times per week. During this time, there was no detection of SARS-CoV-2 by reverse transcriptase quantitative PCR (RT-qPCR) in the residence hall wastewater stream. Aiming to obtain a sample more representative of the residence hall community, a decision was made to use passive samplers beginning in late March onwards. Adopting a Moore swab approach, SARS-CoV-2 was detected in wastewater samples just 2 days after passive samplers were deployed. These samples also tested positive for the B.1.1.7 (Alpha) variant of concern (VOC) using RT-qPCR. The positive result triggered a public health case-finding response, including a mobile testing unit deployed to the residence hall the following day, with testing of nearly 200 students and staff, which identified two laboratory-confirmed cases of Alpha variant COVID-19. These individuals were relocated to a separate quarantine facility, averting an outbreak on campus. Aggregating wastewater and clinical data, the campus wastewater surveillance program has yielded the first estimates of fecal shedding rates of the Alpha VOC of SARS-CoV-2 in individuals from a nonclinical setting.

          IMPORTANCE Among early adopters of wastewater monitoring for SARS-CoV-2 have been colleges and universities throughout North America, many of whom are using this approach to monitor congregate living facilities for early evidence of COVID-19 infection as an integral component of campus screening programs. Yet, while there have been numerous examples where wastewater monitoring on a university campus has detected evidence for infection among community members, there are few examples where this monitoring triggered a public health response that may have averted an actual outbreak. This report details a wastewater-testing program targeting a residence hall on a university campus during spring 2021, when there was mounting concern globally over the emergence of SARS-CoV-2 variants of concern, reported to be more transmissible than the wild-type Wuhan strain. In this communication, we present a clear example of how wastewater monitoring resulted in actionable responses by university administration and public health, which averted an outbreak of COVID-19 on a university campus.

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          Virological assessment of hospitalized patients with COVID-2019

          Coronavirus disease 2019 (COVID-19) is an acute infection of the respiratory tract that emerged in late 20191,2. Initial outbreaks in China involved 13.8% of cases with severe courses, and 6.1% of cases with critical courses3. This severe presentation may result from the virus using a virus receptor that is expressed predominantly in the lung2,4; the same receptor tropism is thought to have determined the pathogenicity-but also aided in the control-of severe acute respiratory syndrome (SARS) in 20035. However, there are reports of cases of COVID-19 in which the patient shows mild upper respiratory tract symptoms, which suggests the potential for pre- or oligosymptomatic transmission6-8. There is an urgent need for information on virus replication, immunity and infectivity in specific sites of the body. Here we report a detailed virological analysis of nine cases of COVID-19 that provides proof of active virus replication in tissues of the upper respiratory tract. Pharyngeal virus shedding was very high during the first week of symptoms, with a peak at 7.11 × 108 RNA copies per throat swab on day 4. Infectious virus was readily isolated from samples derived from the throat or lung, but not from stool samples-in spite of high concentrations of virus RNA. Blood and urine samples never yielded virus. Active replication in the throat was confirmed by the presence of viral replicative RNA intermediates in the throat samples. We consistently detected sequence-distinct virus populations in throat and lung samples from one patient, proving independent replication. The shedding of viral RNA from sputum outlasted the end of symptoms. Seroconversion occurred after 7 days in 50% of patients (and by day 14 in all patients), but was not followed by a rapid decline in viral load. COVID-19 can present as a mild illness of the upper respiratory tract. The confirmation of active virus replication in the upper respiratory tract has implications for the containment of COVID-19.
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            The species Severe acute respiratory syndrome-related coronavirus : classifying 2019-nCoV and naming it SARS-CoV-2

            The present outbreak of a coronavirus-associated acute respiratory disease called coronavirus disease 19 (COVID-19) is the third documented spillover of an animal coronavirus to humans in only two decades that has resulted in a major epidemic. The Coronaviridae Study Group (CSG) of the International Committee on Taxonomy of Viruses, which is responsible for developing the classification of viruses and taxon nomenclature of the family Coronaviridae, has assessed the placement of the human pathogen, tentatively named 2019-nCoV, within the Coronaviridae. Based on phylogeny, taxonomy and established practice, the CSG recognizes this virus as forming a sister clade to the prototype human and bat severe acute respiratory syndrome coronaviruses (SARS-CoVs) of the species Severe acute respiratory syndrome-related coronavirus, and designates it as SARS-CoV-2. In order to facilitate communication, the CSG proposes to use the following naming convention for individual isolates: SARS-CoV-2/host/location/isolate/date. While the full spectrum of clinical manifestations associated with SARS-CoV-2 infections in humans remains to be determined, the independent zoonotic transmission of SARS-CoV and SARS-CoV-2 highlights the need for studying viruses at the species level to complement research focused on individual pathogenic viruses of immediate significance. This will improve our understanding of virus–host interactions in an ever-changing environment and enhance our preparedness for future outbreaks.
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              Detection of SARS-CoV-2 in Different Types of Clinical Specimens

              This study describes results of PCR and viral RNA testing for SARS-CoV-2 in bronchoalveolar fluid, sputum, feces, blood, and urine specimens from patients with COVID-19 infection in China to identify possible means of non-respiratory transmission.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                Microbiol Spectr
                Microbiol Spectr
                spectrum
                Microbiology Spectrum
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2165-0497
                6 October 2021
                Sep-Oct 2021
                6 October 2021
                : 9
                : 2
                : e00792-21
                Affiliations
                [a ] Great Lakes Institute for Environmental Research, University of Windsorgrid.267455.7, , Windsor, Ontario, Canada
                [b ] Civil and Environmental Engineering, University of Windsorgrid.267455.7, , Windsor, Ontario, Canada
                [c ] Student Counselling Centre, University of Windsorgrid.267455.7, , Windsor, Ontario, Canada
                [d ] Residence Services, University of Windsorgrid.267455.7, , Windsor, Ontario, Canada
                [e ] School of the Environment, University of Windsorgrid.267455.7, , Windsor, Ontario, Canada
                [f ] Windsor-Essex County Health Unit, Windsor, Ontario, Canada
                [g ] Department of Integrative Biology, University of Windsorgrid.267455.7, , Windsor, Ontario, Canada
                [h ] Environmental Health and Safety, University of Windsorgrid.267455.7, , Windsor, Ontario, Canada
                [i ] Department of Biomedical Sciences, University of Windsorgrid.267455.7, , Windsor, Ontario, Canada
                [j ] Student Health Services, University of Windsorgrid.267455.7University of Windsor, grid.267455.7, , Windsor, Ontario, Canada
                [k ] Department of Chemistry and Biochemistry, University of Windsorgrid.267455.7, , Windsor, Ontario, Canada
                [l ] Department of Microbiology, The University of Tennessee, Knoxville, Tennessee, USA
                [m ] Great Lakes Center for Fresh Waters and Human Health, Bowling Green State University, Bowling Green, Ohio, USA
                Johns Hopkins Hospital
                Author notes

                Citation Corchis-Scott R, Geng Q, Seth R, Ray R, Beg M, Biswas N, Charron L, Drouillard KD, D’Souza R, Heath DD, Houser C, Lawal F, McGinlay J, Menard SL, Porter LA, Rawlings D, Scholl ML, Siu KWM, Tong Y, Weisener CG, Wilhelm SW, McKay RML. 2021. Averting an outbreak of SARS-CoV-2 in a university residence hall through wastewater surveillance. Microbiol Spectr 9:e00792-21. https://doi.org/10.1128/Spectrum.00792-21.

                Author information
                https://orcid.org/0000-0002-6045-953X
                https://orcid.org/0000-0001-7740-1812
                https://orcid.org/0000-0001-6283-8077
                https://orcid.org/0000-0003-2723-5371
                Article
                00792-21 spectrum.00792-21
                10.1128/Spectrum.00792-21
                8510253
                34612693
                89cb9337-14f3-482b-86e6-3712119b5535
                Copyright © 2021 Corchis-Scott et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                : 7 July 2021
                : 6 September 2021
                Page count
                supplementary-material: 1, Figures: 2, Tables: 0, Equations: 1, References: 65, Pages: 12, Words: 8961
                Funding
                Funded by: Ontario Ministry of the Environment, Conservation and Parks;
                Award ID: Wastewater Surveillance Initiative
                Award Recipient :
                Funded by: Canada Foundation for Innovation (CFI), FundRef https://doi.org/10.13039/501100000196;
                Award ID: EOF-COVID-19 project 40949
                Award Recipient : Award Recipient : Award Recipient : Award Recipient : Award Recipient :
                Funded by: Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (NSERC), FundRef https://doi.org/10.13039/501100000038;
                Award ID: ALLRP 552125 - 20
                Award Recipient : Award Recipient : Award Recipient : Award Recipient : Award Recipient : Award Recipient : Award Recipient : Award Recipient :
                Funded by: Mitacs, FundRef https://doi.org/10.13039/501100004489;
                Award ID: Accelerate FR58758
                Award Recipient : Award Recipient :
                Categories
                Research Article
                public-health, Public Health
                Custom metadata
                September/October 2021

                covid-19,rt-qpcr,sars-cov-2,wastewater
                covid-19, rt-qpcr, sars-cov-2, wastewater

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