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      Rare mutations in N-methyl-D-aspartate glutamate receptors in autism spectrum disorders and schizophrenia

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          Abstract

          Pharmacological, genetic and expression studies implicate N-methyl-D-aspartate (NMDA) receptor hypofunction in schizophrenia (SCZ). Similarly, several lines of evidence suggest that autism spectrum disorders (ASD) could be due to an imbalance between excitatory and inhibitory neurotransmission. As part of a project aimed at exploring rare and/or de novo mutations in neurodevelopmental disorders, we have sequenced the seven genes encoding for NMDA receptor subunits (NMDARs) in a large cohort of individuals affected with SCZ or ASD ( n=429 and 428, respectively), parents of these subjects and controls ( n=568). Here, we identified two de novo mutations in patients with sporadic SCZ in GRIN2A and one de novo mutation in GRIN2B in a patient with ASD. Truncating mutations in GRIN2C, GRIN3A and GRIN3B were identified in both subjects and controls, but no truncating mutations were found in the GRIN1, GRIN2A, GRIN2B and GRIN2D genes, both in patients and controls, suggesting that these subunits are critical for neurodevelopment. The present results support the hypothesis that rare de novo mutations in GRIN2A or GRIN2B can be associated with cases of sporadic SCZ or ASD, just as it has recently been described for the related neurodevelopmental disease intellectual disability. The influence of genetic variants appears different, depending on NMDAR subunits. Functional compensation could occur to counteract the loss of one allele in GRIN2C and GRIN3 family genes, whereas GRIN1, GRIN2A, GRIN2B and GRIN2D appear instrumental to normal brain development and function.

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          Most cited references41

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          Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations

          Evidence for the etiology of autism spectrum disorders (ASD) has consistently pointed to a strong genetic component complicated by substantial locus heterogeneity 1,2 . We sequenced the exomes of 20 sporadic cases of ASD and their parents, reasoning that these families would be enriched for de novo mutations of major effect. We identified 21 de novo mutations, of which 11 were protein-altering. Protein-altering mutations were significantly enriched for changes at highly conserved residues. We identified potentially causative de novo events in 4/20 probands, particularly among more severely affected individuals, in FOXP1, GRIN2B, SCN1A, and LAMC3. In the FOXP1 mutation carrier, we also observed a rare inherited CNTNAP2 mutation and provide functional support for a multihit model for disease risk 3 . Our results demonstrate that trio-based exome sequencing is a powerful approach for identifying novel candidate genes for ASD and suggest that de novo mutations may contribute substantially to the genetic risk for ASD.
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            Estimate of the mutation rate per nucleotide in humans.

            Many previous estimates of the mutation rate in humans have relied on screens of visible mutants. We investigated the rate and pattern of mutations at the nucleotide level by comparing pseudogenes in humans and chimpanzees to (i) provide an estimate of the average mutation rate per nucleotide, (ii) assess heterogeneity of mutation rate at different sites and for different types of mutations, (iii) test the hypothesis that the X chromosome has a lower mutation rate than autosomes, and (iv) estimate the deleterious mutation rate. Eighteen processed pseudogenes were sequenced, including 12 on autosomes and 6 on the X chromosome. The average mutation rate was estimated to be approximately 2.5 x 10(-8) mutations per nucleotide site or 175 mutations per diploid genome per generation. Rates of mutation for both transitions and transversions at CpG dinucleotides are one order of magnitude higher than mutation rates at other sites. Single nucleotide substitutions are 10 times more frequent than length mutations. Comparison of rates of evolution for X-linked and autosomal pseudogenes suggests that the male mutation rate is 4 times the female mutation rate, but provides no evidence for a reduction in mutation rate that is specific to the X chromosome. Using conservative calculations of the proportion of the genome subject to purifying selection, we estimate that the genomic deleterious mutation rate (U) is at least 3. This high rate is difficult to reconcile with multiplicative fitness effects of individual mutations and suggests that synergistic epistasis among harmful mutations may be common.
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              A de novo paradigm for mental retardation.

              The per-generation mutation rate in humans is high. De novo mutations may compensate for allele loss due to severely reduced fecundity in common neurodevelopmental and psychiatric diseases, explaining a major paradox in evolutionary genetic theory. Here we used a family based exome sequencing approach to test this de novo mutation hypothesis in ten individuals with unexplained mental retardation. We identified and validated unique non-synonymous de novo mutations in nine genes. Six of these, identified in six different individuals, are likely to be pathogenic based on gene function, evolutionary conservation and mutation impact. Our findings provide strong experimental support for a de novo paradigm for mental retardation. Together with de novo copy number variation, de novo point mutations of large effect could explain the majority of all mental retardation cases in the population.
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                Author and article information

                Journal
                Transl Psychiatry
                Transl Psychiatry
                Translational Psychiatry
                Nature Publishing Group
                2158-3188
                November 2011
                15 November 2011
                1 November 2011
                : 1
                : 11
                : e55
                Affiliations
                [1 ]simpleCenter of Excellence in Neuroscience of the Université de Montréal (CENUM), Centre de Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), and Department of Medicine, University of Montreal , Montreal, QC, Canada
                [2 ]simpleINSERM Laboratory of Pathophysiology of Psychiatric Diseases, Center of Psychiatry and Neurosciences, U894, Sainte-Anne Hospital , Paris, France
                [3 ]simpleUniversity Paris Descartes, Faculty of Medicine Paris Descartes, Centre d'Evaluation et de Recherche Clinique, Sainte-Anne Hospital , Paris, France
                [4 ]simpleCentre of Excellence in Neuroscience of Université de Montréal (CENUM), Centre de Recherche du CHU Sainte-Justine , Montreal, QC, Canada
                [5 ]simpleDepartment of Pathology and Cell Biology and Le Groupe de Recherche sur le Système Nerveux Central, Université de Montréal, Pavilion Roger-Gaudry , Montréal, QC, Canada
                [6 ]simpleDouglas Mental Health University Institute, Department of Psychiatry, McGill University , Montreal, QC, Canada
                [7 ]simpleChild Psychiatry Branch, National Institute of Mental Health , Bethesda, MD, USA
                [8 ]simpleHarvard Medical School, The Boston VA Healthcare System , Brockton, MA, USA
                [9 ]simpleDepartment of Psychiatry, Montreal Children's Hospital, McGill University , Montreal, QC, Canada
                [10 ]simpleHôpital Rivière-des-Prairies, Centre d'excellence en Trouble envahissants du développement de Université de Montréal (CETEDUM) , Montréal, QC, Canada
                [11 ]simpleResearch Unit on Children's Psychosocial Maladjustment, Laval University , Quebec City, QC, Canada
                [12 ]simpleCanada Research Chair on Child Social development , Quebec City, QC, Canada
                Author notes
                [* ]simpleCHUM Research Centre , 2099 Alexandre-De-Seve Street, Rm Y-3633, Montreal, QC, Canada H2L 2W5 E-mail: guy.rouleau@ 123456umontreal.ca
                [* ]simpleLaboratoire de Physiopathologie des Maladies Psychiatriques, Centre de Psychiatrie et Neurosciences, UMR 894 INSERM- Université Paris Descartes, Faculté de Médecine Paris Descartes, Service Hospitalo Universitaire, Hôpital Sainte-Anne , 7 rue Cabanis, Paris, France 75014. E-mail: marie-odile.krebs@ 123456inserm.fr
                [13]

                The last co-authors equally contributed to the work.

                Article
                tp201152
                10.1038/tp.2011.52
                3309470
                22833210
                8b98d6f4-af5e-425e-9ab1-ca1f545b6abc
                Copyright © 2011 Macmillan Publishers Limited

                This work is licensed under the Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/

                History
                : 26 September 2011
                : 05 October 2011
                Categories
                Original Article

                Clinical Psychology & Psychiatry
                mutation,schizophrenia,autism,nmda
                Clinical Psychology & Psychiatry
                mutation, schizophrenia, autism, nmda

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