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      Global Data for Ecology and Epidemiology: A Novel Algorithm for Temporal Fourier Processing MODIS Data

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          Abstract

          Background

          Remotely-sensed environmental data from earth-orbiting satellites are increasingly used to model the distribution and abundance of both plant and animal species, especially those of economic or conservation importance. Time series of data from the MODerate-resolution Imaging Spectroradiometer (MODIS) sensors on-board NASA's Terra and Aqua satellites offer the potential to capture environmental thermal and vegetation seasonality, through temporal Fourier analysis, more accurately than was previously possible using the NOAA Advanced Very High Resolution Radiometer (AVHRR) sensor data. MODIS data are composited over 8- or 16-day time intervals that pose unique problems for temporal Fourier analysis. Applying standard techniques to MODIS data can introduce errors of up to 30% in the estimation of the amplitudes and phases of the Fourier harmonics.

          Methodology/Principal Findings

          We present a novel spline-based algorithm that overcomes the processing problems of composited MODIS data. The algorithm is tested on artificial data generated using randomly selected values of both amplitudes and phases, and provides an accurate estimate of the input variables under all conditions. The algorithm was then applied to produce layers that capture the seasonality in MODIS data for the period from 2001 to 2005.

          Conclusions/Significance

          Global temporal Fourier processed images of 1 km MODIS data for Middle Infrared Reflectance, day- and night-time Land Surface Temperature (LST), Normalised Difference Vegetation Index (NDVI), and Enhanced Vegetation Index (EVI) are presented for ecological and epidemiological applications. The finer spatial and temporal resolution, combined with the greater geolocational and spectral accuracy of the MODIS instruments, compared with previous multi-temporal data sets, mean that these data may be used with greater confidence in species' distribution modelling.

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          Most cited references49

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          Increased plant growth in the northern high latitudes from 1981 to 1991

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            Satellite imagery in the study and forecast of malaria.

            More than 30 years ago, human beings looked back from the Moon to see the magnificent spectacle of Earth-rise. The technology that put us into space has since been used to assess the damage we are doing to our natural environment and is now being harnessed to monitor and predict diseases through space and time. Satellite sensor data promise the development of early-warning systems for diseases such as malaria, which kills between 1 and 2 million people each year.
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              Cattle movements and bovine tuberculosis in Great Britain.

              For 20 years, bovine tuberculosis (BTB) has been spreading in Great Britain (England, Wales and Scotland) and is now endemic in the southwest and parts of central England and in southwest Wales, and occurs sporadically elsewhere. Although its transmission pathways remain poorly understood, the disease's distribution was previously modelled statistically by using environmental variables and measures of their seasonality. Movements of infected animals have long been considered a critical factor in the spread of livestock diseases, as reflected in strict import/export regulations, the extensive movement restrictions imposed during the 2001 foot-and-mouth disease outbreak, the tracing procedures after a new case of BTB has been confirmed and the Government's recently published strategic framework for the sustainable control on BTB. Since January 2001 it has been mandatory for stock-keepers in Great Britain to notify the British Cattle Movement Service of all cattle births, movements and deaths. Here we show that movements as recorded in the Cattle Tracing System data archive, and particularly those from areas where BTB is reported, consistently outperform environmental, topographic and other anthropogenic variables as the main predictor of disease occurrence. Simulation distribution models for 2002 and 2003, incorporating all predictor categories, are presented and used to project distributions for 2004 and 2005.
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                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2008
                9 January 2008
                : 3
                : 1
                : e1408
                Affiliations
                [1 ]Spatial Ecology and Epidemiology Group, Department of Zoology, University of Oxford, Oxford, United Kingdom
                [2 ]Malaria Public Health and Epidemiology Group, Centre for Geographic Medicine, Kenya Medical Research Institute (KEMRI), University of Oxford, Wellcome Trust Collaborative Programme, Nairobi, Kenya
                University of Southampton, United Kingdom
                Author notes
                * To whom correspondence should be addressed. E-mail: david.rogers@ 123456zoo.ox.ac.uk

                Conceived and designed the experiments: DR. Performed the experiments: AT JS DR DB. Analyzed the data: AT JS DR. Contributed reagents/materials/analysis tools: AT JS DR. Wrote the paper: SH AT JS BP DR DB GW. Other: Wrote first draft of the paper: JS.

                [¤]

                Current address: Smithsonian Tropical Research Institute, Balboa, Ancón, Republic of Panamá

                Article
                07-PONE-RA-02657
                10.1371/journal.pone.0001408
                2171368
                18183289
                8ed9e81a-0b53-4a31-bee6-eae0b8503e36
                Scharlemann et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
                History
                : 2 November 2007
                : 4 December 2007
                Page count
                Pages: 13
                Categories
                Research Article
                Ecology
                Public Health and Epidemiology
                Ecology/Community Ecology and Biodiversity
                Ecology/Conservation and Restoration Ecology
                Ecology/Global Change Ecology
                Ecology/Spatial and Landscape Ecology
                Public Health and Epidemiology/Global Health

                Uncategorized
                Uncategorized

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