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      Nonrigid Registration of Brain Tumor Resection MR Images Based on Joint Saliency Map and Keypoint Clustering

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          Abstract

          This paper proposes a novel global-to-local nonrigid brain MR image registration to compensate for the brain shift and the unmatchable outliers caused by the tumor resection. The mutual information between the corresponding salient structures, which are enhanced by the joint saliency map (JSM), is maximized to achieve a global rigid registration of the two images. Being detected and clustered at the paired contiguous matching areas in the globally registered images, the paired pools of DoG keypoints in combination with the JSM provide a useful cluster-to-cluster correspondence to guide the local control-point correspondence detection and the outlier keypoint rejection. Lastly, a quasi-inverse consistent deformation is smoothly approximated to locally register brain images through the mapping the clustered control points by compact support radial basis functions. The 2D implementation of the method can model the brain shift in brain tumor resection MR images, though the theory holds for the 3D case.

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          Most cited references55

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          DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting.

          A general-purpose deformable registration algorithm referred to as "DRAMMS" is presented in this paper. DRAMMS bridges the gap between the traditional voxel-wise methods and landmark/feature-based methods with primarily two contributions. First, DRAMMS renders each voxel relatively distinctively identifiable by a rich set of attributes, therefore largely reducing matching ambiguities. In particular, a set of multi-scale and multi-orientation Gabor attributes are extracted and the optimal components are selected, so that they form a highly distinctive morphological signature reflecting the anatomical and geometric context around each voxel. Moreover, the way in which the optimal Gabor attributes are constructed is independent of the underlying image modalities or contents, which renders DRAMMS generally applicable to diverse registration tasks. A second contribution of DRAMMS is that it modulates the registration by assigning higher weights to those voxels having higher ability to establish unique (hence reliable) correspondences across images, therefore reducing the negative impact of those regions that are less capable of finding correspondences (such as outlier regions). A continuously-valued weighting function named "mutual-saliency" is developed to reflect the matching uniqueness between a pair of voxels implied by the tentative transformation. As a result, voxels do not contribute equally as in most voxel-wise methods, nor in isolation as in landmark/feature-based methods. Instead, they contribute according to the continuously-valued mutual-saliency map, which dynamically evolves during the registration process. Experiments in simulated images, inter-subject images, single-/multi-modality images, from brain, heart, and prostate have demonstrated the general applicability and the accuracy of DRAMMS. Copyright © 2010 Elsevier B.V. All rights reserved.
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            An overlap invariant entropy measure of 3D medical image alignment

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              International Journal of Computer Vision, 30(2), 79-116
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                Author and article information

                Journal
                Sensors (Basel)
                Sensors (Basel, Switzerland)
                Molecular Diversity Preservation International (MDPI)
                1424-8220
                2009
                17 December 2009
                : 9
                : 12
                : 10270-10290
                Affiliations
                Department of Biomedical Engineering, School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China; E-Mail: gzj0126@ 123456gmail.com
                Author notes
                [* ]Author to whom correspondence should be addressed; E-Mail: bjqin@ 123456sjtu.edu.cn ; Tel.: +86-21-3420-4382.
                Article
                sensors-09-10270
                10.3390/s91210270
                3267221
                22303173
                94890ea4-9ce1-49fc-afe7-91cdf3e55e6f
                © 2009 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland.

                This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license ( http://creativecommons.org/licenses/by/3.0/).

                History
                : 23 October 2009
                : 1 December 2009
                : 9 December 2009
                Categories
                Article

                Biomedical engineering
                clustering,tumor resection,keypoint,brain shift,nonrigid registration,local large deformation,outlier

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