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      Co-Infection of Infectious Hypodermal and Hematopoietic Necrosis Virus (IHHNV) and White Spot Syndrome Virus (WSSV) in the Wild Crustaceans of Andaman and Nicobar Archipelago, India

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          Abstract

          The present study was intended to screen the wild crustaceans for co-infection with Infectious Hypodermal and Hematopoietic Necrosis Virus (IHHNV) and White Spot Syndrome Virus (WSSV) in Andaman and Nicobar Archipelago, India. We screened a total of 607 shrimp and 110 crab samples using a specific polymerase chain reaction, and out of them, 82 shrimps (13.5%) and 5 (4.5%) crabs were found positive for co-infection of IHHNV and WSSV. A higher rate of co-infection was observed in Penaeus monodon and Scylla serrata than other shrimp and crab species. The nucleotide sequences of IHHNV and WSSV obtained from crab in this present study exhibited very high sequence identity with their counterparts retrieved from various countries. Histopathological analysis of the infected shrimp gill sections further confirmed the eosinophilic intra-nuclear cowdry type A inclusion bodies and basophilic intra-nuclear inclusion bodies characteristics of IHHNV and WSSV infections, respectively. The present study serves as the first report on co-infection of WSSV and IHHNV in Andaman and Nicobar Archipelago, India and accentuates the critical need for continuous monitoring of wild crustaceans and appropriate biosecurity measures for brackishwater aquaculture.

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

            The Interactive Tree Of Life ( https://itol.embl.de ) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone. iTOL version 5 introduces a completely new tree display engine, together with numerous new features. For example, a new dataset type has been added (MEME motifs), while annotation options have been expanded for several existing ones. Node metadata display options have been extended and now also support non-numerical categorical values, as well as multiple values per node. Direct manual annotation is now available, providing a set of basic drawing and labeling tools, allowing users to draw shapes, labels and other features by hand directly onto the trees. Support for tree and dataset scales has been extended, providing fine control over line and label styles. Unrooted tree displays can now use the equal-daylight algorithm, proving a much greater display clarity. The user account system has been streamlined and expanded with new navigation options and currently handles >1 million trees from >70 000 individual users. Graphical Abstract iTOL: an online tool for the tree display and annotation.
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              A summary of taxonomic changes recently approved by ICTV.

              M. Mayo (2002)
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                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                Viruses
                Viruses
                viruses
                Viruses
                MDPI
                1999-4915
                15 July 2021
                July 2021
                : 13
                : 7
                : 1378
                Affiliations
                [1 ]Division of Fisheries Science, Indian Council of Agricultural Research-Central Island Agricultural Research Institute, Port Blair 744105, Andaman and Nicobar Islands, India; praveenraj.j@ 123456icar.gov.in (J.P.); rkiruba.sankar@ 123456icar.gov.in (R.K.-S.); varmaysha21@ 123456gmail.com (V.D.); utpalbt22@ 123456gmail.com (U.B.)
                [2 ]Aquatic Animal Health and Environment Division, Indian Council of Agricultural Research-Central Institute of Brackishwater Aquaculture, 75, Santhome High Road, Chennai 600028, Tamil Nadu, India; sathishkumar.t@ 123456icar.gov.in
                [3 ]Peninsular and Marine Fish Genetic Resources Centre, Indian Council of Agricultural Research-National Bureau of Fish Genetic Resources, Ernakulam North P.O., Kochi 682018, Kerala, India; arun.sudhagar@ 123456icar.gov.in
                [4 ]Clinical Division of Fish Medicine, University of Veterinary Medicine Vienna, Veterinarplatz 1, 1210 Vienna, Austria; Mansour.El-Matbouli@ 123456vetmeduni.ac.at
                Author notes
                Author information
                https://orcid.org/0000-0002-9774-5986
                https://orcid.org/0000-0001-8148-0218
                https://orcid.org/0000-0002-1958-2579
                Article
                viruses-13-01378
                10.3390/v13071378
                8310313
                95d27d97-12b4-49ca-8fa4-a1e274c52017
                © 2021 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( https://creativecommons.org/licenses/by/4.0/).

                History
                : 31 May 2021
                : 12 July 2021
                Categories
                Article

                Microbiology & Virology
                ihhnv,wssv,co-infection,wild crustaceans,disease surveillance
                Microbiology & Virology
                ihhnv, wssv, co-infection, wild crustaceans, disease surveillance

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