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      Baseline study of the morphological and genetic characteristics of Haemoproteus parasites in wild pigeons ( Columba livia) from paddy fields in Thailand

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          Abstract

          Haemoproteus columbae is a common haemosporidian parasite of wild pigeons ( Columba livia) reported worldwide. In Thailand, the wild pigeon population is increasing due to paddy field monoculture. However, there are limited reports on the presence of H. columbae in these pigeon populations. The aim of the study was to characterize H. columbae in wild pigeons. A total of 87 wild pigeons were examined using microscopic and molecular methods. Haemoproteus columbae was detected in approximately 27.6% of pigeons and their morphological characteristics were described. The partial cytochrome b ( cyt b) gene sequence of H. columbae was then characterized into three common lineages (HAECOL1, COLIV03, and COQUI05). By highlighting the morphologic and genetic characteristics of H. columbae commonly found in this population of pigeons, this study provides essential regional knowledge about haemosporidian parasites that could benefit future taxonomic and phylogeographic studies.

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          Highlights

          • We report the morphology and genetics of the Haemoproteus parasite found in wild pigeons in paddy fields in Thailand.

          • Of 87 wild pigeons, 27.6% had haemosporidian infection.

          • Based on morphologic characteristics, the Haemoproteus parasite was identified as Haemoproteus columbae.

          • Genetic analysis revealed three common cytb haplotypes: HAECOL1, COLIV03, and COQUI05.

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          Most cited references44

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

            Abstract This article describes several features in the MAFFT online service for multiple sequence alignment (MSA). As a result of recent advances in sequencing technologies, huge numbers of biological sequences are available and the need for MSAs with large numbers of sequences is increasing. To extract biologically relevant information from such data, sophistication of algorithms is necessary but not sufficient. Intuitive and interactive tools for experimental biologists to semiautomatically handle large data are becoming important. We are working on development of MAFFT toward these two directions. Here, we explain (i) the Web interface for recently developed options for large data and (ii) interactive usage to refine sequence data sets and MSAs.
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              DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.

              We present version 6 of the DNA Sequence Polymorphism (DnaSP) software, a new version of the popular tool for performing exhaustive population genetic analyses on multiple sequence alignments. This major upgrade incorporates novel functionalities to analyze large data sets, such as those generated by high-throughput sequencing technologies. Among other features, DnaSP 6 implements: 1) modules for reading and analyzing data from genomic partitioning methods, such as RADseq or hybrid enrichment approaches, 2) faster methods scalable for high-throughput sequencing data, and 3) summary statistics for the analysis of multi-locus population genetics data. Furthermore, DnaSP 6 includes novel modules to perform single- and multi-locus coalescent simulations under a wide range of demographic scenarios. The DnaSP 6 program, with extensive documentation, is freely available at http://www.ub.edu/dnasp.
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                Author and article information

                Contributors
                Journal
                Int J Parasitol Parasites Wildl
                Int J Parasitol Parasites Wildl
                International Journal for Parasitology: Parasites and Wildlife
                Elsevier
                2213-2244
                11 April 2023
                August 2023
                11 April 2023
                : 21
                : 153-159
                Affiliations
                [a ]The Monitoring and Surveillance Center for Zoonotic Diseases in Wildlife and Exotic Animals, Faculty of Veterinary Science, Mahidol University, Salaya, Nakhon Pathom, 73170, Thailand
                [b ]Mahidol University, Division of Conservation Biology, School of Interdisciplinary Studies, Sai Yok, Kanchanaburi, 71150, Thailand
                [c ]Akkhraratchakumari Veterinary College, Walailak University, Nakhon Si Thammarat, 80161, Thailand
                [d ]Department of Entomology, Faculty of Agriculture, Kasetsart University, Bangkok, 10900, Thailand
                Author notes
                []Corresponding author. Phirom.prm@ 123456mahidol.edu
                Article
                S2213-2244(23)00026-3
                10.1016/j.ijppaw.2023.04.003
                10205435
                95eb20c5-f6ae-4c36-8986-6122e159e45e
                © 2023 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 8 February 2023
                : 10 April 2023
                : 10 April 2023
                Categories
                Article

                cytochrome b gene,genetic diversity,haemoproteus columbae,molecular character,morphological character,wild pigeon

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