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      High-purity DNA extraction from animal tissue using picking in the TRIzol-based method

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          Abstract

          TRIzol is used for the extraction of RNA, DNA and proteins from tissues or cells. Here, we present a simple picking method to extract DNA from tissues using TRIzol. Spectrophotometric analysis showed that the 260/280 and 260/230 nm optical density ratio of the picking method's DNA is ideal and better than that obtained by the classic TRIzol method. Gel electrophoresis showed that there was no RNA contamination, and the DNA had not degraded. DNA extracted by the picking method had the same performance in restriction enzyme digestion and quantitative PCR as that obtained by the traditional method. Viral DNA in the infected tissue was also obtained. This modified method facilitates various molecular biology assays.

          METHOD SUMMARY

          In the traditional step of extracting DNA with TRIzol reagent, DNA flocculent clumps will be visible after adding absolute ethanol and mixing upside down, picking the DNA clumps with a pipette tip instead of through centrifugation. The picked DNA was transferred to 0.1 M sodium citrate in 10% ethanol and rinsed twice, then rinsed once in 75% ethanol. It was then dried and dissolved in 8 mM NaOH.

          Most cited references13

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          The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty-something years on.

          Since its introduction, the 'single-step' method has become widely used for isolating total RNA from biological samples of different sources. The principle at the basis of the method is that RNA is separated from DNA after extraction with an acidic solution containing guanidinium thiocyanate, sodium acetate, phenol and chloroform, followed by centrifugation. Under acidic conditions, total RNA remains in the upper aqueous phase, while most of DNA and proteins remain either in the interphase or in the lower organic phase. Total RNA is then recovered by precipitation with isopropanol and can be used for several applications. The original protocol, enabling the isolation of RNA from cells and tissues in less than 4 hours, greatly advanced the analysis of gene expression in plant and animal models as well as in pathological samples, as demonstrated by the overwhelming number of citations the paper gained over 20 years.
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            A rapid TRIzol-based two-step method for DNA-free RNA extraction from Arabidopsis siliques and dry seeds.

            Extraction of high-quality RNA from Arabidopsis seeds has been a challenge. Here we report a two-step TRIzol-based procedure for RNA extraction from Arabidopsis siliques and dry seeds. This procedure employs a modified, high pH (pH 9.5) extraction buffer. High pH plus the addition of either DTT or beta-mercaptoethanol in the extraction buffer effectively inhibits RNase activity during the extraction, and removes most polysaccharides, polyphenols and other insoluble material. TRIzol reagent was subsequently used to purify the RNA. Using this procedure we isolated high-quality DNA-free RNA samples without DNase I treatment from Arabidopsis seeds or siliques in less than 3 h.
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              Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage.

              A systems approach is being applied in many areas of the biological sciences, particularly in cancer research. The coordinated, simultaneous extraction of DNA, RNA, and proteins from a single sample is crucial for accurate correlations between genomic aberrations and their consequences on the transcriptome and proteome. We present an approach to extract and completely solubilize up to 98% of the total protein recovered from archived samples following TRIzoL isolation of RNA and DNA. We also demonstrate using polyacrylamide gel electrophoresis (PAGE) and Western blot analysis that the proteins, representing both a wide molecular weight range and some posttranslational modifications, such as protein phosphorylation, remain stable in phenol-ethanol for up to 3 years at -20 degrees C.
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                Author and article information

                Journal
                BTN
                BioTechniques
                Future Science Ltd (London, UK )
                0736-6205
                1940-9818
                18 December 2020
                March 2021
                : 70
                : 3
                : 186-190
                Affiliations
                1Key Laboratory of Livestock Infectious Diseases in Northeast China, Ministry of Education, College of Animal Science & Veterinary Medicine, Shenyang Agricultural University, Shenyang City, Liaoning Province 110866, China
                2Beijing Animal Disease Prevention & Control Center, Beijing 102609, China
                Author notes
                [* ]Author for correspondence: lbslgy@ 123456syau.edu.cn
                [** ]Author for correspondence: zeliangchen@ 123456yahoo.com
                [‡]

                Authors contributed equally

                Author information
                https://orcid.org/0000-0002-8624-8036
                Article
                10.2144/btn-2020-0142
                33337248
                96ec9444-3e07-4804-a698-4bfc90138d44
                © 2020 Bao Shan LIU

                This work is licensed under the Attribution-NonCommercial-NoDerivatives 4.0 Unported License

                History
                : 28 September 2020
                : 03 December 2020
                : 17 December 2020
                Page count
                Pages: 5
                Funding
                Funded by: Basic Scientific Research Projects of Liaoning Higher Education Institutions
                Award ID: LSNFW201710
                Funded by: National Key R&Development Program of China
                Award ID: 2017YFD0500901, 2017YFD0500305
                Funded by: National Science Foundation for Young Scientists of China
                Award ID: 31702276
                Categories
                Benchmark

                General life sciences,Cell biology,Molecular biology,Biotechnology,Genetics,Life sciences
                viral DNA,picking,high purity,molecular biology assays,DNA,TRIzol,extraction,facilitate,classic method

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