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      Faba bean and pea harvest index estimations using aerial-based multimodal data and machine learning algorithms

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          Abstract

          Early and high-throughput estimations of the crop harvest index (HI) are essential for crop breeding and field management in precision agriculture; however, traditional methods for measuring HI are time-consuming and labor-intensive. The development of unmanned aerial vehicles (UAVs) with onboard sensors offers an alternative strategy for crop HI research. In this study, we explored the potential of using low-cost, UAV-based multimodal data for HI estimation using red–green–blue (RGB), multispectral (MS), and thermal infrared (TIR) sensors at 4 growth stages to estimate faba bean ( Vicia faba L.) and pea ( Pisum sativum L.) HI values within the framework of ensemble learning. The average estimates of RGB (faba bean: coefficient of determination [ R 2] = 0.49, normalized root-mean-square error [NRMSE] = 15.78%; pea: R 2 = 0.46, NRMSE = 20.08%) and MS (faba bean: R 2 = 0.50, NRMSE = 15.16%; pea: R 2 = 0.46, NRMSE = 19.43%) were superior to those of TIR (faba bean: R 2 = 0.37, NRMSE = 16.47%; pea: R 2 = 0.38, NRMSE = 19.71%), and the fusion of multisensor data exhibited a higher estimation accuracy than those obtained using each sensor individually. Ensemble Bayesian model averaging provided the most accurate estimations (faba bean: R 2 = 0.64, NRMSE = 13.76%; pea: R 2 = 0.74, NRMSE = 15.20%) for whole growth stage, and the estimation accuracy improved with advancing growth stage. These results indicate that the combination of low-cost, UAV-based multimodal data and machine learning algorithms can be used to estimate crop HI reliably, therefore highlighting a promising strategy and providing valuable insights for high spatial precision in agriculture, which can help breeders make early and efficient decisions.

          Abstract

          Multiple affordable aerial-based sensors can be used to estimate the harvest index of faba bean and pea with an ensemble Bayesian model averaging algorithm.

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          Random Forests

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              Using Bayesian Model Averaging to Calibrate Forecast Ensembles

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                Author and article information

                Contributors
                Journal
                Plant Physiol
                Plant Physiol
                plphys
                Plant Physiology
                Oxford University Press (US )
                0032-0889
                1532-2548
                March 2024
                03 November 2023
                03 November 2023
                : 194
                : 3
                : 1512-1526
                Affiliations
                National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences , Beijing 100081, China
                National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences , Beijing 100081, China
                National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences , Beijing 100081, China
                National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences , Beijing 100081, China
                Institute of Farmland Irrigation, Chinese Academy of Agricultural Sciences , Xinxiang 453002, China
                National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences , Beijing 100081, China
                National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences , Beijing 100081, China
                Author notes
                Author for correspondence: chenzhen@ 123456caas.cn (Z.C.), zongxuxiao@ 123456caas.cn (X.Z.), yangtao02@ 123456caas.cn (T.Y.)

                The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors ( https://academic.oup.com/plphys/pages/General-Instructions) is Tao Yang ( yangtao02@ 123456caas.cn ).

                Conflict of interest statement. Authors have no conflict of interest to declare.

                Author information
                https://orcid.org/0000-0002-2535-3035
                https://orcid.org/0009-0003-0520-8134
                https://orcid.org/0009-0003-1216-8564
                https://orcid.org/0000-0001-7990-8051
                https://orcid.org/0000-0002-2847-0042
                https://orcid.org/0000-0002-9951-660X
                https://orcid.org/0000-0002-9755-731X
                Article
                kiad577
                10.1093/plphys/kiad577
                10904323
                37935623
                9facbc28-48e3-4874-b574-044f217036a6
                © The Author(s) 2023. Published by Oxford University Press on behalf of American Society of Plant Biologists.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 29 June 2023
                : 13 October 2023
                : 07 November 2023
                Page count
                Pages: 15
                Funding
                Funded by: Key R&D Program of Yunnan Province;
                Funded by: China Agriculture Research System, DOI 10.13039/501100010203;
                Funded by: Ministry of Science and Technology of China;
                Funded by: Agricultural Science and Technology Innovation Program, DOI 10.13039/501100012421;
                Categories
                Research Article
                AcademicSubjects/SCI01270
                AcademicSubjects/SCI01280
                AcademicSubjects/SCI02286
                AcademicSubjects/SCI02287
                AcademicSubjects/SCI02288
                Plphys/54

                Plant science & Botany
                Plant science & Botany

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