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Proteomic Analysis of Human Brown Adipose Tissue Reveals Utilization of Coupled and Uncoupled Energy Expenditure Pathways
research-article
Author(s):
Sebastian Müller
1
,
2
,
3 ,
Miroslav Balaz
1 ,
Patrik Stefanicka
4 ,
Lukas Varga
4
,
5 ,
Ez-Zoubir Amri
6 ,
Jozef Ukropec
5 ,
Bernd Wollscheid
a
,
2 ,
Christian Wolfrum
b
,
1
Publication date (Electronic):
15 July 2016
Journal:
Scientific Reports
Publisher:
Nature Publishing Group
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Abstract
Human brown adipose tissue (BAT) has become an attractive target to combat the current epidemical spread of obesity and its associated co-morbidities. Currently, information on its functional role is primarily derived from rodent studies. Here, we present the first comparative proteotype analysis of primary human brown adipose tissue versus adjacent white adipose tissue, which reveals significant quantitative differences in protein abundances and in turn differential functional capabilities. The majority of the 318 proteins with increased abundance in BAT are associated with mitochondrial metabolism and confirm the increased oxidative capacity. In addition to uncoupling protein 1 (UCP1), the main functional effector for uncoupled respiration, we also detected the mitochondrial creatine kinases (CKMT1A/B, CKMT2), as effective modulators of ATP synthase coupled respiration, to be exclusively expressed in BAT. The abundant expression and utilization of both energy expenditure pathways in parallel highlights the complex functional involvement of BAT in human physiology.
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Most cited references22
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MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes
Multiplexed quantitation via isobaric chemical tags (e.g., tandem mass tags (TMT) and isobaric tags for relative and absolute quantitation (iTRAQ)) has the potential to revolutionize quantitative proteomics. However, until recently the utility of these tags was questionable due to reporter ion ratio distortion resulting from fragmentation of coisolated interfering species. These interfering signals can be negated through additional gas-phase manipulations (e.g., MS/MS/MS (MS3) and proton-transfer reactions (PTR)). These methods, however, have a significant sensitivity penalty. Using isolation waveforms with multiple frequency notches (i.e., synchronous precursor selection, SPS), we coisolated and cofragmented multiple MS2 fragment ions, thereby increasing the number of reporter ions in the MS3 spectrum 10-fold over the standard MS3 method (i.e., MultiNotch MS3). By increasing the reporter ion signals, this method improves the dynamic range of reporter ion quantitation, reduces reporter ion signal variance, and ultimately produces more high-quality quantitative measurements. To demonstrate utility, we analyzed biological triplicates of eight colon cancer cell lines using the MultiNotch MS3 method. Across all the replicates we quantified 8 378 proteins in union and 6 168 proteins in common. Taking into account that each of these quantified proteins contains eight distinct cell-line measurements, this data set encompasses 174 704 quantitative ratios each measured in triplicate across the biological replicates. Herein, we demonstrate that the MultiNotch MS3 method uniquely combines multiplexing capacity with quantitative sensitivity and accuracy, drastically increasing the informational value obtainable from proteomic experiments.
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A creatine-driven substrate cycle enhances energy expenditure and thermogenesis in beige fat.
Thermogenic brown and beige adipose tissues dissipate chemical energy as heat, and their thermogenic activities can combat obesity and diabetes. Herein the functional adaptations to cold of brown and beige adipose depots are examined using quantitative mitochondrial proteomics. We identify arginine/creatine metabolism as a beige adipose signature and demonstrate that creatine enhances respiration in beige-fat mitochondria when ADP is limiting. In murine beige fat, cold exposure stimulates mitochondrial creatine kinase activity and induces coordinated expression of genes associated with creatine metabolism. Pharmacological reduction of creatine levels decreases whole-body energy expenditure after administration of a β3-agonist and reduces beige and brown adipose metabolic rate. Genes of creatine metabolism are compensatorily induced when UCP1-dependent thermogenesis is ablated, and creatine reduction in Ucp1-deficient mice reduces core body temperature. These findings link a futile cycle of creatine metabolism to adipose tissue energy expenditure and thermal homeostasis. PAPERCLIP.
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Anatomical Localization, Gene Expression Profiling, and Functional Characterization of Adult Human Neck Brown Fat
Aaron M. Cypess, Andrew White, Cecile Vernochet … (2013)
The imbalance between energy intake and expenditure is the underlying cause of the current obesity and diabetes pandemics. Central to these pathologies is the fat depot: white adipose tissue (WAT) stores excess calories, and brown adipose tissue (BAT) consumes fuel for thermogenesis using tissue-specific uncoupling protein 1 (UCP1) 1, 2 . BAT was once thought to have a functional role only in rodents and human infants, but it has been recently shown that in response to mild cold exposure, adult human BAT consumes more glucose per gram than any other tissue 3 . In addition to this non-shivering thermogenesis, human BAT may also combat weight gain by becoming more active in the setting of increased whole-body energy intake 4-7 . This phenomenon of BAT-mediated diet-induced thermogenesis has been observed in rodents 8 and suggests that human BAT could be utilized as a safe treatment for obesity and metabolic dysregulation 9 . In this study, we isolated anatomically defined neck fat from adult human volunteers and compared its gene expression, differentiation capacity, and basal oxygen consumption to different mouse adipose depots. While the properties of human neck fat vary substantially, some human samples share many similarities with classical/constitutive rodent BAT. Initial examinations of the principal human neck fat depots revealed brown adipocytes with classic multilocular adipocytes, numerous mitochondria, and a rich investment with capillaries and sympathetic neurons 10 as well as higher expression of UCP1 10,11 . Critical molecular and functional studies are lacking, however, because the human brown adipocytes are distributed heterogeneously, and their precise sites are unknown. To gain a specific description of where BAT is located and its gene expression and functional profiles, we resected adipose tissue from the necks of 31 individuals undergoing surgery (Supplementary Tables 1 and 2 and Supplementary Methods online). Samples were collected from up to five different depots (Fig. 1a), from superficial to most deep: subcutaneous, subplatysmal, carotid sheath, longus colli, and prevertebral. Superficial and deeper fat had the classical histological (Fig. 1b) and ultrastructural (Supplementary Fig. 1a–d) features of rodent white and brown fat, respectively 12 . The microanatomical distinctions persisted at the level of gene expression. Non-parametric ANOVA demonstrated a significant difference among the depots for expression of WAT-associated leptin gene (LEP), which was more enriched in superficial fat (P = 0.002) (Fig. 1c and Supplementary Table 3). The opposite was seen with UCP1 gene expression (P = 0.002). Specifically, in two of the deeper fat depots, carotid sheath and longus colli, UCP1 expression was 12- to 72-fold higher than the two superficial depots, subcutaneous and subplatysmal (P = 0.03 or lower for all four pair-wise comparisons). The PV site also had more UCP1 than that of subcutaneous fat (P = 0.006). Therefore, although there was great variability among adult human neck fat in terms of UCP1 expression, we consistently found BAT to be most abundant near the carotid sheath and longus colli muscles. These deep locations may have functional significance: the longus colli depot is adjacent to the sympathetic chain, which mediates the rapid neuronal response to cold 13 , and the carotid sheath BAT envelops the carotid arteries, permitting effective heating of the cerebral vasculature 14 . Having established the anatomical location of human neck BAT, we determined its likely developmental lineage. It has recently been shown with mouse tissue that brown adipocytes are not all the same. The large and constitutively present interscapular BAT derives from a lineage common to skeletal muscle and is termed classical/constitutive BAT 15-17 , while other brown adipocytes can be induced to grow within predominantly white depots and have been termed brite/beige/inducible BAT 16-19 . In order to provide more than one perspective on the relationship between lineage marker genes and human neck fat, we used three different, complementary approaches: (a) paired comparisons between the subcutaneous and deep fat in each person to give a basic description of which genes are found in which sites; (b) cluster analysis to view how the gene expression patterns relate to each other; and (c) factor analysis to identify a potential underlying framework that accounts for the correlations seen among the genes’ expression patterns. From 13 pairs of superficial and deep human neck adipose tissue, expression levels of 12 mouse marker genes were compared. In the subcutaneous depots, LEP (P = 0.001) and HOXC9 (P = 0.03), both markers of WAT 1, 15 , were higher, while in the deeper depots, UCP1 (P = 0.001) and the classical/constitutive-associated markers ZIC1 15, 18, 20-22 (P = 0.002) and LHX8 15, 18, 20-22 (P = 0.02) were significantly elevated (Fig. 2a, Supplementary Fig. 2, and Supplementary Table 4). Cluster analysis (Fig. 2b) reinforced this patterning and showed that there were three distinct groups of marker genes in human neck fat: one that is down-regulated in deeper depots (SHOX2, LEP, HOXC9); one that is not changed (TNFRSF9 – also known as CD137, TMEM26, TBX1, MPZL2 – also known as EVA1, EBF3, FBXO31); and one that is up-regulated (UCP1, ZIC1, LHX8). Factor analysis (Table 1) provided a similar categorization, with some slight differences. In this case, the best markers for the groupings were MPZL2, HOXC9, EBF3, FBXO31, and LEP (“white” component); TNFRSF9, TMEM26, and SHOX2 (“brite/beige” component); and UCP1, LHX8, and ZIC1 (“brown” component). The three complementary marker analyses indicate that deep human neck brown adipocytes most closely resemble cells from the classical/constitutive BAT lineage in the mouse. This designation is supported by anatomical studies showing this depot is found in human infants and persists even into the eighth decade of life 23 . Functionally, this may also indicate that human neck BAT may have the same capacity for high rates of energy expenditure seen in rodent interscapular BAT 24 . Of note, these results represent the combined signal from whole tissue biopsies and not individual cells. Given the mixed composition of human BAT 5-7, 10, 19, 25 , our findings are also consistent with the presence of some brite/beige adipocytes in the neck depot, since beige marker TNFRSF9 18 showed a nonsignificant, two-fold enrichment in the deeper tissue and clustered the closest to UCP1 after brown markers ZIC1 and LHX8. That some genes previously designated as markers of a brown lineage in mice (EBF3, MPZL2, FBXO31) 19 were not higher in the deeper human neck depots or associated closely with UCP1 reflect the possibility that adipose tissue actually comprises multiple mini-organs both in the mouse 22 and human 26 , with distinct developmental and functional characteristics. A clear definition of what these cell types are, their origins, and their gene signatures is still a work in progress. To determine if adult human neck BAT also has a functional profile similar to classical/constitutive rodent BAT, we compared the expression of genes associated with rodent WAT and BAT differentiation, function, and thermogenesis 18, 20, 27, 28 . From five mice, levels were measured in five different depots: interscapular BAT (iBAT), inguinal subcutaneous WAT, perigonadal WAT, mesenteric WAT, and perirenal WAT. These five depots were analyzed together with the deep neck fat from three individuals with high UCP1 expression and hence likely to be most purely BAT. The associated WAT from the individuals’ subcutaneous neck depots was used as a comparator. Human BAT had an expression pattern that was very similar to mouse iBAT (Fig. 3a and Supplementary Tables 3 and 5), including the high expression of genes involved with mitochondrial biogenesis and thermogenesis (UCP1, PPARGC1A - also known as PGC1α, DIO2) and low levels of NRIP1, also known as RIP140, a nuclear corepressor whose reduction leads to increased oxidative metabolism and mitochondrial biogenesis 29 . Human SQ WAT was strikingly different, more like mouse mesenteric and perigonadal depots. The ability to grow new functional brown adipocytes is likely to be essential for utilizing BAT thermogenesis to treat metabolic dysregulation 30 . We isolated preadipocytes from the stromal vascular fraction of human neck adipose tissue and differentiated them ex vivo over ten days in conditions used to induce brown adipogenesis in mouse preadipocytes 17 . To reproduce the effects of cold-mediated adrenergic stimulation, we treated the differentiated human adipocytes with 500 μM dibutyryl-cAMP. Compared with vehicle control, mature adipocytes derived from SVF of neck adipose tissue responded to dibutyryl-cAMP with significant increases in several BAT genes, including UCP1 (P = 0.04) and PPARGC1A (P = 0.01)(Fig. 3b and Supplementary Table 6). These increases in gene expression demonstrates that as with stromal vascular fraction from supraclavicular sites 31 , the in vitro differentiated cells from neck fat possess the capacity to respond to adrenergic stimulation with expression of genes needed for thermogenesis and are therefore bona fide brown adipocytes. That PRDM16 did not increase as much reflects its role as a cell fate determining factor 20 rather than a mediator of sympathetically-mediated thermogenesis. To compare the energy expenditure of mouse and human fat, we isolated samples of neck fat from four individuals’ superficial and deep depots and compared the unstimulated oxygen consumption rate (OCR) in whole 10 mg sections with mouse iBAT (Fig. 3c). The OCR in mouse iBAT was 874 pmol/min and in the deeper fat next to the longus colli in two individuals was 252 and 354 pmol/min, nearly 50% of mouse iBAT. In contrast, the basal OCR of human subcutaneous WAT was nearly two orders of magnitude lower than both longus colli and mouse iBAT (P = 0.001). In summary, we more precisely define the anatomical regions where adult human BAT can be found in the principal neck fat depots. Adult human neck BAT possesses molecular signatures of classical/constitutive BAT. With further work it should ultimately be distinguishable by a small number of genes that will permit rapid screening of interventions designed to increase BAT mass and energy expenditure. Most notably, functional human BAT can be induced to grow ex vivo from precursor cells present in neck fat depots, and its unstimulated energy expenditure is similar to mouse BAT. Online Methods Human Study Population This study followed institutional guidelines and was approved by the Human Studies Institutional Review Boards of Beth Israel Deaconess Medical Center, Joslin Diabetes Center, and Massachusetts General Hospital. Individuals were identified either by Dr. White prior to anterior cervical spine surgery or by Dr. Hasselgren prior to thyroidectomy, and written informed consented was obtained by other study staff prior to surgery. All people undergoing thyroidectomies had TSH values within the normal range. There were two independent cohorts: for anatomical localization and comparison to mouse adipose tissue depots, neck fat from18 individuals was studied. For lineage tracing, neck fat from13 different people was studied. Healthy volunteers for the MRI imaging were recruited via electronic advertisements. MRI Studies were carried out using a 3.0 Tesla Siemens Allegra MRI System equipped for echo planar imaging with quadrature head coil. The adult human subject lay supine in the scanner with the head immobilized using cushioned supports. Two sets of structural images were collected using a T1-weighted MPRAGE sequence (TR/TE = 2.73/3.19 ms, flip angle = 7°, FOV = 256 × 256 mm; slice thickness = 1.33 mm). Light and Electron Microscopy For light microscopy, we placed freshly resected brown and white fat into 4% PBS-buffered formalin (Sigma), and processed as described 17,32 . Immunohistochemical assays were done with the use of polyclonal goat IgG to UCP1 (Santa Cruz Biotechnology, sc6528) at 1:50 dilution. For light and transmission electron microscopy, fat was fixed in 2.5% glutaraldehyde in 0.1M phosphate buffer, pH 7.4, osmicated, and embedded in plastic (Araldite) then processed as described in the Joslin Advanced Microscopy Core 33 . Gene Expression for Anatomical Localization of Adult Human Neck Fat Freshly resected fat from the neck was placed immediately into RNAlater (Qiagen). We extracted total cellular RNA from tissue using an RNeasy minikit (Qiagen) according to instructions. Quantity and purity were assessed by ultraviolet absorbance at 260 and 280 nm. cDNA was prepared from 6 ng/μL of RNA using the High Capacity cDNA Reverse Transcription kit (Applied Biosystems) according to the manufacturer’s instructions. 6 μL (36 ng) of cDNA was used in a 20 μL PCR using TaqMan® Gene Expression Assays with a FAM dye label for the following genes (Supplementary Tables 3 and 5): uncoupling protein 1 (UCP1), type 2 deiodinase (DIO2), β3-adrenergic receptor (ADRB3), peroxisome proliferator-activated receptor gamma coactivator-1 alpha (PPARGC1A, also known as PGC1α), cell death-inducing DNA fragmentation factor alpha-like effector A (CIDEA), PRD1-BF1-RIZ1 homologous domain containing 16 (PRDM16), receptor-interacting protein 140 (NRIP1, also known as RIP140); fibrillin 1 (FBN1); engrailed 1 (EN1); homeobox A5 (HOXA5); homeobox C9 (HOXC9); and leptin (LEP). Quantitative RT-PCR assays were run in duplicates and quantitated in the ABI Prism 7900 sequence detection system. The values were normalized to the expression of TATA-binding protein (TBP) in each sample, and results were expressed as ratios in arbitrary units. Gene Expression and Cluster Analysis of Markers of Adipocyte Lineage From 13 individuals undergoing routine neck surgery, we resected fat was and prepared cDNA as above using primer sequences for quantitative real-time PCR (Supplementary Table 4). Assays were run in duplicates and quantified in the ABI Prism 7900 sequence detection system using SYBR® Green as previously described 32 for the following genes: tumor necrosis factor receptor superfamily, member 9 (TNFRSF9, also known as CD137); early B-cell factor 3 (EBF3); myelin protein zero-like 2 (MPZL2, also known as EVA1); F-box protein 31 (FBXO31); LIM homeobox 8 (LHX8); short stature homeobox 2 (SHOX2); T-box 1 (TBX1); transmembrane protein 26 (TMEM26); Zic family member 1 (ZIC1). We normalized values to the expression of 18S ribosomal RNA in each sample and expressed results as ratios in arbitrary units. WAT was defined as the subcutaneous fat, and BAT was defined as the sample of deep fat that had the highest expression of UCP1. We clustered genes via pairwise complete-linkage hierarchical clustering according to the city-block distance between rows. The clustering visualization was done using GenePattern 34 . Heat Map for Mouse-Human Comparison All animals were housed and utilized according to the institutional guidelines stipulated by the Joslin Diabetes Center Institutional Animal Care and Usage Committee. We resected mouse fat depots from C57Bl/6 male mice, 12 weeks old (Taconic). Human and mouse RNA was isolated and measured as above. After normalization to TBP, the gene expression levels were log-transformed. We generated the heat map using GenePattern 34 using the relative abundance of each gene across all 31 samples. Ex Vivo Differentiation For isolation of pre-adipocytes, we isolated the stromal vascular fraction (SVF) from (1) superficial fat (pooled subcutaneous and subplatysmal) and (2) fat located in the deeper neck regions (pooled: carotid sheath, longus colli, prevertebral). Freshly resected fat from the neck was collected, minced and subsequently digested using collagenase 1 (2 mg/mL in phosphate-buffered saline with addition of 3.5% bovine serum albumin; Worthington Biochemical Corporation), and the SVF was isolated as previously described 17,35 . SVF cells were plated and grown until 90% confluence in growth medium supplemented with 10% fetal bovine serum in the presence of 5 ng/mL human basic fibroblast growth factor (Sigma-Aldrich), 10 ng/mL human epidermal growth factor, 10 ng/mL platelet-derived growth factor-BB (both from PeproTech), and 10 ng/mL murine leukemia inhibitory factor (EMD Millipore) 17,36 . We seeded cells at 15k cells per 48-well and grew them for two days until confluent. They were then differentiated for ten days in growth medium without growth factors and supplemented with 2% FBS and adipogenic induction cocktail (50 μM indomethacin, 0.5 μM insulin, 33 μM biotin, 17 μM pantothenate, 0.1 μM dexamethasone, 2 nM liothyronine, 540 μM isobutylmethylxanthine). Ten days later, we treated the mature adipocytes with 500 μM dibutyryl-cAMP or vehicle for 4 h, and then isolated RNA as described 32 . Bioenergetics Studies were carried as described previously 37 . We collected adipose tissue samples from individuals during surgery and from C57Bl/6 male mice, 12-14 weeks old. Both sets of tissues were rinsed with unbuffered KHB media containing 111 mM NaCl, 4.7 mM KCl, 2 mM MgSO4, 1.2 mM Na2HPO4, 0.5 mM carnitine, 2.5 mM glucose, and 10 mM sodium pyruvate, cut into pieces (~10 mg), washed extensively, and then each piece placed in a single well of a XF24-well Islet Flux plate (#101174-100; Seahorse Bioscience) and covered with a customized screen that allows for free perfusion while minimizing tissue movement. We added KHB (450 μL) to each well and studied samples in an XF24 extracellular flux analyzer machine using the following protocol: oxygen concentration was measured over time periods of 2 min at 6-min intervals, consisting of a 2-min mixing period and a 4-min waiting period. Basal OCR was measured for each sample in triplicate. Each reported OCR value was an average of five independent pieces per tissue per experiment for mice and 2-3 for individuals. Statistical Analyses We analyzed the data using JMP® Pro 9.0.0 software (SAS Institute, Inc., Cary, NC). All P values presented are two-tailed, and values less than 0.05 were considered to indicate statistical significance. Comparison of the gene expression in different anatomical depots was done using the nonparametric Wilcoxon sign-ranks test. We generated principal components using log-transformed gene expression values via the principal components method with diagonals = 1 and did orthogonal rotation using the Varimax method. Values are factor loadings, the correlation coefficient of the relationship between the components produced and the individual adipose tissue genes. R1, R2, and R3 represent the first, second, and third rotated components extracted. Supplementary Material 1 2
Author and article information
Journal
Journal ID (nlm-ta): Sci Rep
Journal ID (iso-abbrev): Sci Rep
Title:
Scientific Reports
Publisher:
Nature Publishing Group
ISSN
(Electronic):
2045-2322
Publication date
(Electronic):
15
July
2016
Publication date Collection: 2016
Volume: 6
Electronic Location Identifier: 30030
Affiliations
[4
]Department of Otorhinolaryngology – Head and Neck Surgery, Faculty of Medicine and
University Hospital, Comenius University , Bratislava, Slovakia
Author notes
Article
Publisher Item ID: srep30030DOI: 10.1038/srep30030
PMC ID: 4945940
PubMed ID: 27418403
SO-VID: a4afaff6-1346-4afd-88e0-98d1fba19bac
Copyright © Copyright © 2016, Macmillan Publishers Limited
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This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
History
Date
received
: 12
May
2016
Date
accepted
: 28
June
2016
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