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      Identification and functional validation of FDA-approved positive and negative modulators of the mitochondrial calcium uniporter

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          Summary

          The mitochondrial calcium uniporter (MCU), the highly selective channel responsible for mitochondrial Ca 2+ entry, plays important roles in physiology and pathology. However, only few pharmacological compounds directly and selectively modulate its activity. Here, we perform high-throughput screening on a US Food and Drug Administration (FDA)-approved drug library comprising 1,600 compounds to identify molecules modulating mitochondrial Ca 2+ uptake. We find amorolfine and benzethonium to be positive and negative MCU modulators, respectively. In agreement with the positive effect of MCU in muscle trophism, amorolfine increases muscle size, and MCU silencing is sufficient to blunt amorolfine-induced hypertrophy. Conversely, in the triple-negative breast cancer cell line MDA-MB-231, benzethonium delays cell growth and migration in an MCU-dependent manner and protects from ceramide-induced apoptosis, in line with the role of mitochondrial Ca 2+ uptake in cancer progression. Overall, we identify amorolfine and benzethonium as effective MCU-targeting drugs applicable to a wide array of experimental and disease conditions.

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          Highlights

          • We screen an FDA-approved drug library for mitochondrial Ca 2+ uptake modulators

          • Amorolfine and benzethonium modulate MCU activity

          • Amorolfine increases MCU-dependent mitochondrial metabolism and muscle size

          • Benzethonium decreases MCU-dependent cancer cell growth and migration

          Abstract

          In search of mitochondrial Ca 2+ uptake modulators, De Mario et al. identify amorolfine and benzethonium as positive hits of a 1,600 FDA drug library high-throughput screen. Amorolfine increases mitochondrial metabolism and muscle size in an MCU-dependent manner. Benzethonium negatively regulates MCU activity, mROS formation, and cancer cell growth and migration.

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          Most cited references51

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          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            Mitochondria as sensors and regulators of calcium signalling.

            During the past two decades calcium (Ca(2+)) accumulation in energized mitochondria has emerged as a biological process of utmost physiological relevance. Mitochondrial Ca(2+) uptake was shown to control intracellular Ca(2+) signalling, cell metabolism, cell survival and other cell-type specific functions by buffering cytosolic Ca(2+) levels and regulating mitochondrial effectors. Recently, the identity of mitochondrial Ca(2+) transporters has been revealed, opening new perspectives for investigation and molecular intervention.
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              Integrative genomics identifies MCU as an essential component of the mitochondrial calcium uniporter.

              Mitochondria from diverse organisms are capable of transporting large amounts of Ca(2+) via a ruthenium-red-sensitive, membrane-potential-dependent mechanism called the uniporter. Although the uniporter's biophysical properties have been studied extensively, its molecular composition remains elusive. We recently used comparative proteomics to identify MICU1 (also known as CBARA1), an EF-hand-containing protein that serves as a putative regulator of the uniporter. Here, we use whole-genome phylogenetic profiling, genome-wide RNA co-expression analysis and organelle-wide protein coexpression analysis to predict proteins functionally related to MICU1. All three methods converge on a novel predicted transmembrane protein, CCDC109A, that we now call 'mitochondrial calcium uniporter' (MCU). MCU forms oligomers in the mitochondrial inner membrane, physically interacts with MICU1, and resides within a large molecular weight complex. Silencing MCU in cultured cells or in vivo in mouse liver severely abrogates mitochondrial Ca(2+) uptake, whereas mitochondrial respiration and membrane potential remain fully intact. MCU has two predicted transmembrane helices, which are separated by a highly conserved linker facing the intermembrane space. Acidic residues in this linker are required for its full activity. However, an S259A point mutation retains function but confers resistance to Ru360, the most potent inhibitor of the uniporter. Our genomic, physiological, biochemical and pharmacological data firmly establish MCU as an essential component of the mitochondrial Ca(2+) uniporter.
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                Author and article information

                Contributors
                Journal
                Cell Rep
                Cell Rep
                Cell Reports
                Cell Press
                2211-1247
                22 June 2021
                22 June 2021
                22 June 2021
                : 35
                : 12
                : 109275
                Affiliations
                [1 ]Department of Biomedical Sciences, University of Padua, 35131 Padua, Italy
                [2 ]Department of Cell and Developmental Biology, Consortium for Mitochondrial Research, University College London, London WC1E 6BT, UK
                [3 ]Bioinformatics Image Core (BIONIC), MRC Laboratory for Molecular Cell Biology, University College London, Gower Street, London WC1E 6BT, UK
                [4 ]Cell Signalling and Autophagy Group, MRC Laboratory for Molecular Cell Biology, University College London, Gower Street, London WC1E 6BT, UK
                [5 ]Department of Molecular Bioscience, School of Veterinary Medicine, University of California, Davis, Davis, CA 95616, USA
                [6 ]Francis Crick Institute, London WC1E 6BT, UK
                [7 ]Myology Center (CIR-Myo), University of Padua, 35131 Padua, Italy
                Author notes
                []Corresponding author rosario.rizzuto@ 123456unipd.it
                [∗∗ ]Corresponding author cristina.mammucari@ 123456unipd.it
                [8]

                Present address: International Collaboration on Repair Discoveries (ICORD), University of British Columbia, Vancouver, BC, Canada

                [9]

                Lead contact

                Article
                S2211-1247(21)00642-2 109275
                10.1016/j.celrep.2021.109275
                8242467
                34161774
                a5fb65bd-53ca-4764-8b90-26531f400b78
                © 2021 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 14 October 2020
                : 10 May 2021
                : 28 May 2021
                Categories
                Article

                Cell biology
                mitochondrial ca2+ uptake,mitochondrial calcium uniporter,mcu,high-throughput screening,amorolfine,benzethonium,skeletal muscle hypertrophy,triple-negative breast cancer,fda-approved drugs

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