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      Pleistocene South American native ungulates (Notoungulata and Litopterna) of the historical Roth collections in Switzerland, from the Pampean Region of Argentina

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          Abstract

          The fossil collections made by early explorers in South America have been fundamental to reveal the past diversity of extinct mammals and unravel their evolutionary history. One important early explorer in South America was the Swiss-Argentine palaeontologist Kaspar Jacob Roth, known as Santiago Roth (1850, Herisau, Switzerland-1924, Buenos Aires, Argentina), who made significant collections of fossil mammals that are housed in museums in Europe and Argentina. The important collections of Roth in Switzerland include iconic Pleistocene megafauna from the Pampean Region (Argentina). The palaeontological significance of the Pampean Region relies on its abundant record of fossil vertebrates that documents diversity dynamics and paleoenvironmental change in southern South America, serving as the basis for the South American biostratigraphical scale of the late Neogene and Quaternary. The South American native ungulates (SANUs) were hoofed placental mammals that radiated in South America. The clades Notoungulata and Litopterna include, among others, the last representatives of SANUs megafauna in the continent. We revise and describe for the first time the SANUs specimens from the Pampean Region of the Roth collections in Switzerland. The collections include two species of notoungulates ( Toxodon cf. T. platensis and Mesotherium cristatum) and one litoptern species ( Macrauchenia patachonica). The occurrences are restricted to the early and middle Pleistocene (pre-Lujanian Stages/Ages). Although the SANUs diversity in the Roth collections is low in comparison with other groups (e.g., xenarthrans), some of the specimens are very complete, including skulls and postcranial remains. The completeness of the Ma. patachonica material allows an update and reinterpretation of some of the details of the dentition and the postcranial skeleton of this iconic species. In addition to its historical importance, the SANU specimens from the Roth collections provide important information to study the paleobiology and evolution of South American megafauna and evaluate hypotheses about their extinction in the continent.

          Resumen

          Las colecciones de fósiles realizadas por los primeros exploradores en América del Sur han sido fundamentales para revelar la diversidad pasada de los mamíferos sudamericanos y desentrañar su historia evolutiva. Un importante explorador en América del Sur fue el paleontólogo suizo-argentino Kaspar Jacob Roth, conocido como Santiago Roth (1850, Herisau, Suiza-1924, Buenos Aires, Argentina), quien realizó importantes colecciones de mamíferos fósiles que se encuentran en museos de Europa y Argentina. Las colecciones de Roth en Suiza incluyen la icónica megafauna del Pleistoceno de la Región Pampeana (Argentina). La importancia paleontológica de la Región Pampeana se basa en su abundante registro de vertebrados fósiles que documenta la diversidad y el cambio paleoambiental en el sur de Sudamérica, sirviendo como base para la escala bioestratigráfica sudamericana del Neógeno tardío y Cuaternario. Los ungulados nativos sudamericanos (SANUs, por sus siglas en inglés) eran mamíferos placentarios con pezuñas que radiaron en Sudamérica. Los clados Notoungulata y Litopterna incluyen, entre otros, los últimos representantes de la megafauna de SANUs en el continente. En este trabajo, revisamos y describimos por primera vez los SANUs de la Región Pampeana de las colecciónes de Roth en Suiza. Las colecciónes incluyen dos especies de notungulados ( Toxodon cf. T. platensis y Mesotherium cristatum) y una especie de litopterna ( Macrauchenia patachonica). Las ocurrencias están restringidas al Pleistoceno temprano y medio (Pisos/Edades anteriores al Lujanense). Aunque la diversidad de SANU en las colecciónes Roth es baja en comparación con otros grupos (por ejemplo, xenarthros), algunos de los especímenes son muy completos, e incluyen cráneos y restos poscraneales. Lo completo del material de Ma. patachonica permite una actualización y reinterpretación de algunos de los detalles de la dentición y el esqueleto poscraneal de esta icónica especie. Además de su importancia histórica, los SANUs de la colección Roth brindan información importante para estudiar la paleobiología y evolución de la megafauna sudamericana y evaluar hipótesis sobre su extinción en el continente.

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          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            Ancient proteins resolve the evolutionary history of Darwin's South American ungulates.

            No large group of recently extinct placental mammals remains as evolutionarily cryptic as the approximately 280 genera grouped as 'South American native ungulates'. To Charles Darwin, who first collected their remains, they included perhaps the 'strangest animal[s] ever discovered'. Today, much like 180 years ago, it is no clearer whether they had one origin or several, arose before or after the Cretaceous/Palaeogene transition 66.2 million years ago, or are more likely to belong with the elephants and sirenians of superorder Afrotheria than with the euungulates (cattle, horses, and allies) of superorder Laurasiatheria. Morphology-based analyses have proved unconvincing because convergences are pervasive among unrelated ungulate-like placentals. Approaches using ancient DNA have also been unsuccessful, probably because of rapid DNA degradation in semitropical and temperate deposits. Here we apply proteomic analysis to screen bone samples of the Late Quaternary South American native ungulate taxa Toxodon (Notoungulata) and Macrauchenia (Litopterna) for phylogenetically informative protein sequences. For each ungulate, we obtain approximately 90% direct sequence coverage of type I collagen α1- and α2-chains, representing approximately 900 of 1,140 amino-acid residues for each subunit. A phylogeny is estimated from an alignment of these fossil sequences with collagen (I) gene transcripts from available mammalian genomes or mass spectrometrically derived sequence data obtained for this study. The resulting consensus tree agrees well with recent higher-level mammalian phylogenies. Toxodon and Macrauchenia form a monophyletic group whose sister taxon is not Afrotheria or any of its constituent clades as recently claimed, but instead crown Perissodactyla (horses, tapirs, and rhinoceroses). These results are consistent with the origin of at least some South American native ungulates from 'condylarths', a paraphyletic assembly of archaic placentals. With ongoing improvements in instrumentation and analytical procedures, proteomics may produce a revolution in systematics such as that achieved by genomics, but with the possibility of reaching much further back in time.
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              Contribución al conocimiento de los mamíferos fósiles de la República Argentina

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                Author and article information

                Contributors
                juan.carrillo@unifr.ch
                Journal
                Swiss J Palaeontol
                Swiss J Palaeontol
                Swiss Journal of Palaeontology
                Springer International Publishing (Cham )
                1664-2376
                1664-2384
                6 October 2023
                6 October 2023
                2023
                : 142
                : 1
                : 28
                Affiliations
                [1 ]GRID grid.8534.a, ISNI 0000 0004 0478 1713, Department of Biology, , University of Fribourg, and Swiss Institute of Bioinformatics, ; Chemin du Musée 10, Fribourg, Switzerland
                [2 ]Red Paleontológica U-Chile, Departamento de Biología, Facultad de Ciencias, Universidad de Chile, ( https://ror.org/047gc3g35) Santiago, Chile
                Author notes

                Editorial handling: Analía M. Forasiepi

                Author information
                http://orcid.org/0000-0003-2475-3341
                https://orcid.org/0000-0002-6130-9322
                Article
                291
                10.1186/s13358-023-00291-5
                10558389
                37810207
                a65f79de-00e8-45d6-89e4-ad54fb051eac
                © Akademie der Naturwissenschaften Schweiz (SCNAT) 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 16 June 2023
                : 6 September 2023
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung;
                Award ID: TMPFP2_209818
                Award Recipient :
                Categories
                Research Article
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                © Akademie der Naturwissenschaften Schweiz (SCNAT) 2023

                pleistocene,argentina,santiago roth,palaeontological collections,switzerland,notoungulata,litopterna,mesotherium,toxodon,macrauchenia,pleistoceno,colecciones paleontológicas,suiza

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