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      Waveguide-Mode Sensors as Aptasensors

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          Abstract

          Aptamers are artificial nucleic acid ligands that can be generated by in vitro selection through partition and amplification. Aptamers can be generated against a wide range of biomolecules through the formation of versatile stem-loop structures. Because aptamers are potential substitutes for antibodies and drugs, the development of an aptamer-based sensor (aptasensor) is mandatory for diagnosis. We previously reported that waveguide-mode sensors are useful in the analysis of a wide range of biomolecular interactions, including aptamers. The advantages of the waveguide-mode sensor that we developed include physical and chemical stability and that higher sensitivity can be achieved with ease by perforating the waveguide layer or using colored materials such as dyes or metal nanoparticles as labels. Herein, we provide an overview of the strategies and applications for aptamer-based analyses using waveguide-mode sensors.

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          Most cited references60

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          Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.

          L Gold, C Tuerk (1990)
          High-affinity nucleic acid ligands for a protein were isolated by a procedure that depends on alternate cycles of ligand selection from pools of variant sequences and amplification of the bound species. Multiple rounds exponentially enrich the population for the highest affinity species that can be clonally isolated and characterized. In particular one eight-base region of an RNA that interacts with the T4 DNA polymerase was chosen and randomized. Two different sequences were selected by this procedure from the calculated pool of 65,536 species. One is the wild-type sequence found in the bacteriophage mRNA; one is varied from wild type at four positions. The binding constants of these two RNA's to T4 DNA polymerase are equivalent. These protocols with minimal modification can yield high-affinity ligands for any protein that binds nucleic acids as part of its function; high-affinity ligands could conceivably be developed for any target molecule.
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            Aptamer-based biosensors

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              Die Bestimmung optischer Konstanten von Metallen durch Anregung von Oberflächenplasmaschwingungen

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                Author and article information

                Journal
                Sensors (Basel)
                Sensors (Basel, Switzerland)
                Molecular Diversity Preservation International (MDPI)
                1424-8220
                2012
                15 February 2012
                : 12
                : 2
                : 2136-2151
                Affiliations
                Electronics and Photonics Research Institute, National Institute of Advanced Industrial Science and Technology, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8562, Japan; E-Mail: k.awazu@ 123456aist.go.jp
                Author notes
                [* ]Authors to whom correspondence should be addressed; E-Mails: gopi-subashchandrabose@ 123456aist.go.jp (S.C.B.G.); m-fujimaki@ 123456aist.go.jp (M.F.); Tel.: +81-29-860-5620; Fax: +81-29-861-2930.
                Article
                sensors-12-02136
                10.3390/s120202136
                3304158
                22438756
                a88131b2-4ce0-4593-94a4-c489c311fd10
                © 2012 by the authors; licensee MDPI, Basel, Switzerland

                This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license ( http://creativecommons.org/licenses/by/3.0/).

                History
                : 11 January 2012
                : 7 February 2012
                : 8 February 2012
                Categories
                Review

                Biomedical engineering
                selex,waveguide,aptasensor,optics,aptamer
                Biomedical engineering
                selex, waveguide, aptasensor, optics, aptamer

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