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      World Endometriosis Research Foundation Endometriosis Phenome and Biobanking Harmonization Project: III. Fluid biospecimen collection, processing, and storage in endometriosis research

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          Abstract

          Objective

          To harmonize standard operating procedures (SOPs) and standardize the recording of associated data for collection, processing, and storage of fluid biospecimens relevant to endometriosis.

          Design

          An international collaboration involving 34 clinical/academic centers and 3 industry collaborators from 16 countries on 5 continents.

          Setting

          In 2013, 2 workshops were conducted, followed by global consultation, bringing together 54 leaders in endometriosis research and sample processing worldwide.

          Patient(s)

          None.

          Intervention(s)

          Consensus SOPs were based on: [1] systematic comparison of SOPs from 18 global centers collecting fluid samples from women with and without endometriosis on a medium/large scale (publication on >100 cases), [2] literature evidence where available, or consultation with laboratory experts otherwise, and [3] several global consultation rounds.

          Main Outcome Measure(s)

          Standard recommended and minimum required SOPs for biofluid collection, processing, and storage in endometriosis research.

          Result(s)

          We developed recommended standard and minimum required SOPs for the collection, processing, and storage of plasma, serum, saliva, urine, endometrial/peritoneal fluid, and menstrual effluent, and a biospecimen data-collection form necessary for interpretation of sample-derived results.

          Conclusion(s)

          The Endometriosis Phenome and Biobanking Harmonisation Project SOPs allow endometriosis research centers to decrease variability in biofluid sample results, facilitating between-center comparisons and collaborations. The procedures are also relevant to research into other female conditions involving biofluid samples subject to cyclic reproductive influences. The consensus SOPs are based on the best available evidence; areas with limited evidence are identified as requiring further pilot studies. The SOPs will be reviewed based on investigator feedback, and through systematic tri-annual follow-up. Updated versions will be made available at: endometriosisfoundation.org/ephect.

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          Most cited references72

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          Gene expression analysis of endometrium reveals progesterone resistance and candidate susceptibility genes in women with endometriosis.

          The identification of molecular differences in the endometrium of women with endometriosis is an important step toward understanding the pathogenesis of this condition and toward developing novel strategies for the treatment of associated infertility and pain. In this study, we conducted global gene expression analysis of endometrium from women with and without moderate/severe stage endometriosis and compared the gene expression signatures across various phases of the menstrual cycle. The transcriptome analysis revealed molecular dysregulation of the proliferative-to-secretory transition in endometrium of women with endometriosis. Paralleled gene expression analysis of endometrial specimens obtained during the early secretory phase demonstrated a signature of enhanced cellular survival and persistent expression of genes involved in DNA synthesis and cellular mitosis in the setting of endometriosis. Comparative gene expression analysis of progesterone-regulated genes in secretory phase endometrium confirmed the observation of attenuated progesterone response. Additionally, interesting candidate susceptibility genes were identified that may be associated with this disorder, including FOXO1A, MIG6, and CYP26A1. Collectively these findings provide a framework for further investigations on causality and mechanisms underlying attenuated progesterone response in endometrium of women with endometriosis.
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            Mutation of FOXL2 in granulosa-cell tumors of the ovary.

            Granulosa-cell tumors (GCTs) are the most common type of malignant ovarian sex cord-stromal tumor (SCST). The pathogenesis of these tumors is unknown. Moreover, their histopathological diagnosis can be challenging, and there is no curative treatment beyond surgery. We analyzed four adult-type GCTs using whole-transcriptome paired-end RNA sequencing. We identified putative GCT-specific mutations that were present in at least three of these samples but were absent from the transcriptomes of 11 epithelial ovarian tumors, published human genomes, and databases of single-nucleotide polymorphisms. We confirmed these variants by direct sequencing of complementary DNA and genomic DNA. We then analyzed additional tumors and matched normal genomic DNA, using a combination of direct sequencing, analyses of restriction-fragment-length polymorphisms, and TaqMan assays. All four index GCTs had a missense point mutation, 402C-->G (C134W), in FOXL2, a gene encoding a transcription factor known to be critical for granulosa-cell development. The FOXL2 mutation was present in 86 of 89 additional adult-type GCTs (97%), in 3 of 14 thecomas (21%), and in 1 of 10 juvenile-type GCTs (10%). The mutation was absent in 49 SCSTs of other types and in 329 unrelated ovarian or breast tumors. Whole-transcriptome sequencing of four GCTs identified a single, recurrent somatic mutation (402C-->G) in FOXL2 that was present in almost all morphologically identified adult-type GCTs. Mutant FOXL2 is a potential driver in the pathogenesis of adult-type GCTs. 2009 Massachusetts Medical Society
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              Saliva specimen: a new laboratory tool for diagnostic and basic investigation.

              The assay of saliva is an increasing area of research with implications for basic and clinical purposes. Although this biological fluid is easy to manipulate and collect, careful attention must be directed to limit variation in specimen integrity. Recently, the use of saliva has provided a substantial addition to the diagnostic armamentarium as an investigative tool for disease processes and disorders. In addition to its oral indications, the analysis of saliva provides important information about the functioning of various organs within the body. In this respect, endocrine research certainly occupies a central role. The present review considers the laboratory aspects of salivary assays with respect to the different analytes including ions, drugs and various non-protein/protein compounds such as hormones and immunoglobulins. This review also examines the consequences of preanalytical variation with respect to collection strategy and subsequent storage conditions. It is likely that the use of saliva in assays will continue to expand thus providing a new instrument of investigation for physiologic as well as pathophysiologic states.
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                Author and article information

                Contributors
                Journal
                Fertil Steril
                Fertil. Steril
                Fertility and Sterility
                Elsevier for the American Society for Reproductive Medicine
                0015-0282
                1556-5653
                1 November 2014
                November 2014
                : 102
                : 5
                : 1233-1243
                Affiliations
                [a ]Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom
                [b ]Organ Systems, Department of Development and Regeneration, Katholieke Universiteit Leuven, Leuven, Belgium
                [c ]Department of Obstetrics and Gynaecology, Leuven University Fertility Centre, University Hospital Leuven, Leuven, Belgium
                [d ]Department of Obstetrics, Gynecology, and Reproductive Biology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts
                [e ]Boston Center for Endometriosis, Boston Children's Hospital and Brigham & Women's Hospital, Boston, Massachusetts
                [f ]Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts
                [g ]Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts
                [h ]World Endometriosis Research Foundation (WERF), London, United Kingdom
                [i ]Palo Alto Medical Foundation Fertility Physicians of Northern California, Palo Alto, California
                [j ]University of California San Francisco, San Francisco, California
                [k ]Nuffield Department of Obstetrics & Gynaecology, University of Oxford, Oxford, United Kingdom
                [l ]Endometriosis CaRe Centre Oxford, University of Oxford, Oxford, United Kingdom
                Author notes
                []Reprint requests: Krina T. Zondervan, D.Phil., Nuffield Department of Obstetrics and Gynaecology, John Radcliffe Hospital, University of Oxford, Roosevelt Drive, Oxford OX3 9DU, United Kingdom. krinaz@ 123456well.ox.ac.uk
                Article
                S0015-0282(14)01835-4
                10.1016/j.fertnstert.2014.07.1208
                4230639
                25256929
                a9b32ef7-6026-43ef-bae7-3aa3da38bdea
                © 2014 The Authors
                History
                : 23 April 2014
                : 9 July 2014
                : 9 July 2014
                Categories
                Views and Reviews

                Obstetrics & Gynecology
                endometriosis,standardization,standard operating procedures,biological fluid samples,ephect

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