Chau Le Ngoc: Role: InvestigationRole: MethodologyRole: Validation
Thanh Tran Thi Thanh: Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
Visualization
Phuong Tran Thi Lan: Role: Formal analysisRole: InvestigationRole: Methodology
Trinh Nguyen Mai: Role: InvestigationRole: Methodology
Trang Nguyen Hoa: Role: Investigation
Ngoc Nghiem My: Role: Investigation
Tan Le Van: Role: InvestigationRole: ResourcesRole: SoftwareRole: Writing – review & editing
Hung Le Manh: Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: Project administrationRole:
SupervisionRole: Writing – review & editing
Phuong Le Thanh: Role: ConceptualizationRole: InvestigationRole: MethodologyRole: Project administrationRole:
SupervisionRole: Writing – review & editing
Chau Nguyen Van Vinh: Role: ConceptualizationRole: Project administrationRole: SupervisionRole: Writing
– review & editing
Guy Thwaites: Role: ConceptualizationRole: Funding acquisitionRole: SupervisionRole: Writing – review
& editing
Graham Cooke: Role: InvestigationRole: ResourcesRole: Writing – review & editing
Gabrielle M. Heilek: Role: Funding acquisitionRole: Resources
Cecilia Shikuma: Role: ConceptualizationRole: InvestigationRole: ResourcesRole: Writing – review &
editing
Thuy Le: Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
Stephen Baker: Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
ResourcesRole: Writing – original draftRole: Writing – review & editing
Motiur Rahman:
ORCID: http://orcid.org/0000-0002-6702-5355
Role: ConceptualizationRole: InvestigationRole: Project administrationRole: ResourcesRole:
SupervisionRole: Writing – original draftRole: Writing – review & editing
Yury E. Khudyakov: Role: Editor
Journal ID (nlm-ta): PLoS One
Journal ID (iso-abbrev): PLoS ONE
Journal ID (publisher-id): plos
Journal ID (pmc): plosone
Title:
PLoS ONE
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Electronic):
1932-6203
Publication date
(Electronic):
13
March
2019
Publication date Collection: 2019
Volume: 14
Issue: 3
Electronic Location Identifier: e0212734
Affiliations
[1
]
Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam
[2
]
The Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam
[3
]
Centre for Tropical Medicine and Global Health, Nuffield Department of Clinical Medicine,
Oxford University, Oxford, United Kingdom
[4
]
Imperial College, London, United Kingdom
[5
]
Roche Molecular Systems, Inc., Pleasanton, California, United States of America
[6
]
Hawaii Center for AIDS, University of Hawaii at Manoa, Honolulu, HI, United States
of America
[7
]
Duke University School of Medicine, Durham, NC, United States of America
Centers for Disease Control and Prevention, UNITED STATES
Author notes
Competing Interests: This study was partly funded by Roche molecular diagnostics, the employer of Gabrielle
M. Heilek. Two authors, Karen Saylors and Nathan Wolfe (part of the group authorship)
are affiliated to Metabiota. There are no patents, products in development or marketed
products to declare. This does not alter our adherence to all the PLOS ONE policies
on sharing data and materials, as detailed online in the guide for authors.
¶ Membership of VIZIONS consortium is provided in the acknowledgmenst
Author information
Article
Publisher ID:
PONE-D-18-28643
DOI: 10.1371/journal.pone.0212734
PMC ID: 6415813
PubMed ID: 30865664
SO-VID: b082c31f-b2cf-409c-b6c7-43f441da5098
Copyright © © 2019 Le Ngoc et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by: Roche Molecular System
Award ID: RMS L15043
Award Recipient
:
ORCID: http://orcid.org/0000-0002-6702-5355
Motiur Rahman
Funded by: Wellcome Trust (GB)
Award Recipient
:
Guy Thwaites
This work was supported by WT-VIZIONS (Wellcome Trust-Vietnamese Initiative on Zoonotic
Infections) and by “Roche molecular diagnostics” under agreement no RMS L15043 with
Oxford University, UK. Roche Molecular Systems, Inc. provided support in the form
of salaries for author GMH but did not have any additional role in the study design,
data collection and analysis, decision to publish, or preparation of the manuscript.
The specific role of this author is articulated in the ‘author contributions’ section.
Subject:
Research Article
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Biology and life sciences
Subject:
Organisms
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Viruses
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RNA viruses
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Flaviviruses
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Hepacivirus
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Hepatitis C virus
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Biology and life sciences
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Microbiology
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Medical microbiology
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Microbial pathogens
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Viral pathogens
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Flaviviruses
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Hepacivirus
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Hepatitis C virus
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Medicine and health sciences
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Pathology and laboratory medicine
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Pathogens
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Microbial pathogens
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Viral pathogens
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Flaviviruses
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Hepacivirus
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Hepatitis C virus
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Biology and life sciences
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Organisms
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Viruses
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Viral pathogens
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Flaviviruses
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Hepacivirus
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Hepatitis C virus
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Biology and life sciences
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Microbiology
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Medical microbiology
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Microbial pathogens
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Viral pathogens
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Hepatitis viruses
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Hepatitis C virus
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Medicine and health sciences
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Pathology and laboratory medicine
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Pathogens
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Microbial pathogens
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Viral pathogens
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Hepatitis viruses
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Hepatitis C virus
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Biology and life sciences
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Organisms
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Viruses
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Viral pathogens
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Hepatitis viruses
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Hepatitis C virus
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Biology and Life Sciences
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Biogeography
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Phylogeography
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Ecology and Environmental Sciences
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Biogeography
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Phylogeography
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Earth Sciences
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Geography
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Biogeography
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Phylogeography
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Biology and Life Sciences
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Evolutionary Biology
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Population Genetics
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Phylogeography
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Biology and Life Sciences
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Genetics
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Population Genetics
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Phylogeography
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Biology and Life Sciences
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Population Biology
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Population Genetics
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Phylogeography
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People and Places
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Geographical Locations
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Asia
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Vietnam
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Medicine and Health Sciences
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Infectious Diseases
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Co-Infections
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Biology and Life Sciences
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Genetics
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Molecular Genetics
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Biology and Life Sciences
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Molecular Biology
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Molecular Genetics
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Research and Analysis Methods
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Database and Informatics Methods
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Bioinformatics
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Sequence Analysis
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Biology and Life Sciences
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Virology
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Viral Structure
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Viral Core
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Research and Analysis Methods
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Database and Informatics Methods
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Sequence Analysis
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Sequence Alignment
