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      GUI Implementation of VCDtools, A Program to Analyze Computed Vibrational Circular Dichroism Spectra

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          Abstract

          As computing power increases, vibrational circular dichroism (VCD) calculations on molecules of larger sizes and complexities become possible. At the same time, the spectra resulting from these computations become increasingly more cumbersome to analyze. Here, we describe the GUI implementation into the Amsterdam Density Functional (ADF) software package of VCDtools, a toolbox that provides a user-friendly means to analyze VCD spectra. Key features are the use of the generalized coupled oscillator analysis methods, as well as an easy visualization of the atomic electric and magnetic transition dipole moments which together provide detailed insight in the origin of the VCD intensity. Using several prototypical examples we demonstrate the functionalities of the program. In particular, we show how the spectra can be analyzed to detect differences between theory and experiment arising from large-amplitude motions or incorrect molecular structures and, most importantly, how the program can be used to prevent incorrect enantiomeric assignments.

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              Quantenmechanische Theorie der nat�rlichen optischen Aktivit�t von Fl�ssigkeiten und Gasen

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                Author and article information

                Journal
                J Chem Inf Model
                J Chem Inf Model
                ci
                jcisd8
                Journal of Chemical Information and Modeling
                American Chemical Society
                1549-9596
                1549-960X
                12 December 2019
                27 January 2020
                : 60
                : 1
                : 259-267
                Affiliations
                []Van ’t Hoff Institute for Molecular Sciences, University of Amsterdam , Science Park 904, 1098 XH Amsterdam, The Netherlands
                []Software for Chemisty and Materials , De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
                []Amsterdam Center for Multiscale Modeling, Section Theoretical Chemistry, Faculty of Sciences, Vrije Universiteit Amsterdam , De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
                [§ ]Institute for Molecules and Materials, FELIX Laboratory, Radboud University , Toernooiveld 7c, 6525 ED Nijmegen, The Netherlands
                []Department of Environmental Science, Physics, Physical Education and Sport, Lucian Blaga University of Sibiu , loan Ratiu Street, Number 7-9, 550012 Sibiu, Romania
                Author notes
                Article
                10.1021/acs.jcim.9b00956
                6988127
                31830414
                b62ca385-fe6f-4bed-b0e9-ce2dddf5863f
                Copyright © 2019 American Chemical Society

                This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License, which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.

                History
                : 15 October 2019
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                ci9b00956
                ci9b00956

                Computational chemistry & Modeling
                Computational chemistry & Modeling

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