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      Investigating the Cytotoxicity of Ru(II) Polypyridyl Complexes by Changing the Electronic Structure of Salicylaldehyde Ligands

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          Abstract

          A novel class of Ru(II)-based polypyridyl complexes with an auxiliary salicylaldehyde ligand [Ru(phen) 2(X-Sal)]BF 4 {X: H ( 1), 5-Cl ( 2), 5-Br ( 3), 3,5-Cl 2 ( 4), 3,5-Br 2 ( 5), 3-Br,5-Cl ( 6), 3,5-I 2 ( 7), 5-NO 2 ( 8), 5-Me ( 9), 4-Me ( 10), 4-OMe ( 11), and 4-DEA ( 12), has been synthesized and characterized by elemental analysis, FT-IR, and 1H/ 13C NMR spectroscopy. The molecular structure of 4, 6, 9, 10, and 11 was determined by single-crystal X-ray diffraction analysis which revealed structural similarities. DFT and TD-DFT calculations showed that they also possess similar electronic structures. Absorption/emission spectra were recorded for 2, 3, 10, and 11. All Ru-complexes, unlike the pure ligands and the complex lacking the salicylaldehyde component, displayed outstanding antiproliferative activity in the screening test (10 μM) against CCRF-CEM leukemia cells underlining the crucial role of the presence of the auxiliary ligand for the biological activity. The two most active derivatives, namely 7 and 10, were selected for continuous assays showing IC 50 values in the submicromolar and micromolar range against drug-sensitive CCRF-CEM and multidrug-resistant CEM/ADR5000 leukemia cells, respectively. These two compounds were investigated in silico for their potential binding to duplex DNA well-matched and mismatched base pairs, since they showed remarkable selectivity indexes (2.2 and 19.5 respectively) on PBMC cells.

          Abstract

          A panel of Ru(II)-based complexes with general formula [Ru(phen) 2(X-Sal)]BF 4 and distorted octahedral geometry was synthesized and characterized (elemental analysis and spectroscopic methods). All Ru-complexes, unlike pure ligands and complex lacking the salicylaldehyde auxiliary component, displayed outstanding antiproliferative activity against CCRF-CEM leukemia cells. The top two compounds showed remarkable IC 50 values (submicromolar on CCRF-CEM) and selectivity indexes (up to 19.5 on PBMC). In silico studies indicated they bind preferentially to the anticancer target duplex DNA mismatched base pairs.

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          A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu.

          The method of dispersion correction as an add-on to standard Kohn-Sham density functional theory (DFT-D) has been refined regarding higher accuracy, broader range of applicability, and less empiricism. The main new ingredients are atom-pairwise specific dispersion coefficients and cutoff radii that are both computed from first principles. The coefficients for new eighth-order dispersion terms are computed using established recursion relations. System (geometry) dependent information is used for the first time in a DFT-D type approach by employing the new concept of fractional coordination numbers (CN). They are used to interpolate between dispersion coefficients of atoms in different chemical environments. The method only requires adjustment of two global parameters for each density functional, is asymptotically exact for a gas of weakly interacting neutral atoms, and easily allows the computation of atomic forces. Three-body nonadditivity terms are considered. The method has been assessed on standard benchmark sets for inter- and intramolecular noncovalent interactions with a particular emphasis on a consistent description of light and heavy element systems. The mean absolute deviations for the S22 benchmark set of noncovalent interactions for 11 standard density functionals decrease by 15%-40% compared to the previous (already accurate) DFT-D version. Spectacular improvements are found for a tripeptide-folding model and all tested metallic systems. The rectification of the long-range behavior and the use of more accurate C(6) coefficients also lead to a much better description of large (infinite) systems as shown for graphene sheets and the adsorption of benzene on an Ag(111) surface. For graphene it is found that the inclusion of three-body terms substantially (by about 10%) weakens the interlayer binding. We propose the revised DFT-D method as a general tool for the computation of the dispersion energy in molecules and solids of any kind with DFT and related (low-cost) electronic structure methods for large systems.
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                Author and article information

                Journal
                Inorg Chem
                Inorg Chem
                ic
                inocaj
                Inorganic Chemistry
                American Chemical Society
                0020-1669
                1520-510X
                29 December 2023
                15 January 2024
                : 63
                : 2
                : 1083-1101
                Affiliations
                []Department of Chemistry, University of Isfahan , 81746-73441 Isfahan, Iran
                []Departamento de Química, Facultad de Ciencias, Universidad de Burgos , Plaza Misael Bañuelos s/n, 09001 Burgos, Spain
                [§ ]Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina , Viale Ferdinando Stagno D’Alcontres 31, I-98166 Messina, Italy
                []Department of Pharmaceutical Biology, Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg University , Staudinger Weg 5, 55128 Mainz, Germany
                []Department of Medicinal Chemistry, Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg University , Staudinger Weg 5, 55128 Mainz, Germany
                [# ]Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
                []Department of Chemistry, Faculty Chemistry, Alzahra University , Vanak, P.O. Box 1993891176, 1993891176 Tehran, Iran
                Author notes
                Author information
                https://orcid.org/0000-0002-3020-8596
                https://orcid.org/0000-0002-2421-1529
                https://orcid.org/0000-0002-1735-2016
                https://orcid.org/0000-0002-7994-8253
                https://orcid.org/0000-0002-1359-8684
                Article
                10.1021/acs.inorgchem.3c03414
                10792608
                38156413
                ba7951f8-f99b-408f-b35b-116ba6b6f648
                © 2023 American Chemical Society

                Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained ( https://creativecommons.org/licenses/by/4.0/).

                History
                : 30 September 2023
                : 18 December 2023
                : 11 December 2023
                Funding
                Funded by: Iran National Science Foundation, doi 10.13039/501100003968;
                Award ID: 4005765
                Funded by: University of Isfahan, doi 10.13039/501100007087;
                Award ID: NA
                Categories
                Article
                Custom metadata
                ic3c03414
                ic3c03414

                Inorganic & Bioinorganic chemistry
                Inorganic & Bioinorganic chemistry

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